Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq3232 219 6e-51 seq2592 127 3e-23 seq3051 111 2e-18 seq1795 111 2e-18 >seq3232 Length=25038 Score = 219 bits (242), Expect = 6e-51 Identities = 204/259 (79%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || ||||| ||||| | ||||||| ||||||||| || ||| | Sbjct 3137 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCA 3196 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 |||||||| ||| |||||||| |||||||| |||||||||||| |||||||||||||| Sbjct 3197 CCATGAAGGACGACTCGATCGAAGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCT 3256 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | ||||| || |||||||| | ||||| | ||||| | ||| | ||| Sbjct 3257 CCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCTTACA 3316 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || ||||| |||||| | || |||||| | || |||||||| || || | ||| ||| Sbjct 3317 TCGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACA 3376 Query 260163 CGGCGCGCTACGTCGACCA 260181 | ||||||||||||||||| Sbjct 3377 CCGCGCGCTACGTCGACCA 3395 Score = 120 bits (132), Expect = 4e-21 Identities = 301/458 (66%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || || |||||||| ||| || Sbjct 3397 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCATGGCACGCTGACGTC 3456 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| ||||||||||||| ||| |||| || |||| || Sbjct 3457 TTCGAGTTCCTGGACCTTCGCAAGAACCACGGCA----AGGAGGAGGTCC--GCGCTCGT 3510 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| ||||||||| || | | | ||| | || Sbjct 3511 GATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCCGCCAGC 3570 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| | || || |||||||| |||||| |||||||| | Sbjct 3571 GAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAG 3630 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086 || |||| | | ||| | || | || | ||||| Sbjct 3631 TTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGA-AGACGATCCCCGC 3689 Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146 | | || | |||| || ||| | | ||||| |||| ||||||| || | |||| | Sbjct 3690 GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACCGGCAACCCGTTCATGCT 3749 Query 262147 CTACAAGGACGCCGTCAACCTGACCAGC-AACCAGCAGAACCTGGGCACCACGACAGAGG 262205 |||||||||||||| ||| | | | | ||||| ||||||| ||||| | | | Sbjct 3750 CTACAAGGACGCCG-CAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGT 3808 Query 262206 CCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCC 262243 | ||| |||||||||||||| || ||| ||| ||||| Sbjct 3809 CGAACTTGTGCACCGAGATCATCGAGTACTCGGCGCCC 3846 Score = 100 bits (110), Expect = 4e-15 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Plus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 |||||||||||| ||| ||||||||| |||||| | | ||| | | | || ||| Sbjct 4767 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 4825 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 || ||||||| || | ||| |||||||| || ||||||||| | || | | || Sbjct 4826 TGTCGGCCGATCGAGGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 4884 Query 263291 A-CCCGACGGCCG-AGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 | ||||||| | | ||| |||||||||||||| ||| | ||| || || || || Sbjct 4885 AGCCCGACGATGGCACAGC-TCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAA 4943 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| ||||||||||| ||||||| || |||| | || || | ||||||||||| Sbjct 4944 GACGGGCATGTACTACTTGCGCACGCGCGCCGCCGTTGGTGCGATCAAGTTCACCGTCGA 5003 Query 263409 TCAGG 263413 |||| Sbjct 5004 CCAGG 5008 >seq2592 Length=1546 Score = 127 bits (140), Expect = 3e-23 Identities = 169/230 (73%), Gaps = 16/230 (7%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 1216 CAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 1269 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC--GC 725033 |||| | |||||||| ||||||||||| |||| ||||||| ||||||||| ||| Sbjct 1270 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCACCGAGGC--GTCCAAG 1327 Query 725034 CTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| ||| |||| ||||| || ||| ||||||||||||||||| | || Sbjct 1328 CTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTC 1384 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1385 CGATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1434 >seq3051 Length=61137 Score = 111 bits (122), Expect = 2e-18 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 31842 GATCTGGGCACAGTAC-AAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 31900 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 31901 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 31960 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 ||||||||||||| |||||||||||| ||| ||||| || ||||||| ||| || Sbjct 31961 CGCACGTCCTCGCC-TTTTTCGCCGCCTCCGACGGCATTGTCAACGAGAACTTGGTCGAG 32019 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| ||||| ||| Sbjct 32020 CGATTCTCTG-GTGAGGTCCAGTCCGCCGAGGCTCGATGCTTCTACGGTTTCCAAATC 32076 >seq1795 Length=37806 Score = 111 bits (122), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 12/230 (5%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||| ||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 36014 CAAAGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 36067 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||| | |||||||| ||||||||||| |||| || |||| ||||||||| || Sbjct 36068 CATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGTATCGCCACCGAGGCATCCAAACT 36127 Query 725036 GGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||| ||| |||| ||||| || ||| |||| |||||||| ||| | || || Sbjct 36128 CGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGAGAGATCCAAACCTCGGTTCG 36184 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||| | | ||| ||| || ||| ||||||| |||| || ||||||| Sbjct 36185 CTTGATCCTCCCCGGAGAATTGTCCAAGCACGCCATCTCGGAAGGCACCA 36234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177451916903450