Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2960 170 2e-37 seq3232 129 7e-25 seq2953 129 7e-25 seq1695 113 5e-20 seq1880 82.4 9e-11 >seq2960 Length=54936 Score = 170 bits (188), Expect = 2e-37 Identities = 275/393 (70%), Gaps = 2/393 (1%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| || || ||| ||| || || ||| ||||| || ||| | Sbjct 33887 CGCTTTTACCAAGCCTCGACCTCCGAGTTGTACGGCAAGGTCGTCGAAACCCCTCAATCC 33946 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||||||||||||||| || ||| ||||||||| | ||| | || ||| Sbjct 33947 GAGACGACACCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTGG 34006 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| || ||| ||| ||| | |||||| Sbjct 34007 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCCTGCAACGGCATCTTGTTCAAC 34066 Query 7412 CATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAA 7470 || || || ||| | || ||| ||| ||||||||| | ||||||| || | | || Sbjct 34067 CACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCGC 34125 Query 7471 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGA 7530 | ||| | ||| || |||| | | || | | || ||||| | || | | || Sbjct 34126 CGAGATCTCGCTCGGTCAACAGGACTGCCTTTACCTCGGCAACATGGAGGCCAAGCGTGA 34185 Query 7531 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGC 7590 |||||| |||||| ||||| || || | ||||||| | ||||| || ||||| | Sbjct 34186 TTGGGGACACGCGCGCGACTACGTCGAGGGTATGTGGATGATGCTGCAGCAAGACACCCC 34245 Query 7591 CGACGAATATGTAGTAGCAACGGGTGAGACCCA 7623 |||||| | ||| | || |||||||||||||| Sbjct 34246 CGACGACTTTGTCCTCGCGACGGGTGAGACCCA 34278 >seq3232 Length=25038 Score = 129 bits (142), Expect = 7e-25 Identities = 500/781 (64%), Gaps = 15/781 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| || ||||| |||||||||| ||| |||| || || || | ||||| || || Sbjct 3030 CCCGCAACACATGCTCATGCGCGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGT 3089 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||| || | ||| || |||||| | | || | ||||| | || || ||||| Sbjct 3090 CTTGCAGTCGTACAACCTCATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTT 3149 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || | || || ||||| || ||| ||||| || Sbjct 3150 CAACGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCACCATGAAGGACGA 3209 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | || ||||| | || || | | ||| |||| ||||| ||| || || Sbjct 3210 CTCGATCGAAGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 3269 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||||| || || |||||| | | | || | ||| || || || || Sbjct 3270 TGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCTTACATCGCCGGCACGAA 3329 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 || | || | || || | || ||||| || || | ||| ||| |||||||| || Sbjct 3330 CGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGT 3389 Query 104581 AAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCA 104634 | |||| ||| ||||| ||| | |||| |||| || ||||||||||| Sbjct 3390 CGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCATGGCA 3446 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGG 104692 ||| || || | |||||||| || | || ||||| || | ||||||| |||| Sbjct 3447 CGCTGACGTCTTCGAGTTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGCGC 3506 Query 104693 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 | || |||||||||| || ||||||||||| ||||| || ||| || | || |||| Sbjct 3507 T--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCC 3564 Query 104753 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGT 104812 || | ||| | ||||| || || | | || || || ||| ||| | | || Sbjct 3565 GCCAGCGAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGC 3624 Query 104813 GAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTG 104872 || ||||| ||| | | | || ||||| | || || || || | |||| | Sbjct 3625 GAAGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATC 3684 Query 104873 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 || || || | | | ||| | || ||||| | | || ||| || || | || | Sbjct 3685 CCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACCGGCAACCCGTT 3743 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||| ||||| |||||| ||| |||| || |||||||| | || |||||| Sbjct 3744 CATGCTCTACAAGGACGCCGCAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAA 3803 Query 104992 G 104992 | Sbjct 3804 G 3804 >seq2953 Length=106328 Score = 129 bits (142), Expect = 7e-25 Identities = 165/225 (73%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| || |||||| ||| || || ||| || || || || | Sbjct 86255 CGCTTCTACCAAGCCTCGACCTCGGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAGTCC 86314 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| |||||| |||||||||| | ||| | || ||| Sbjct 86315 GAGACGACCCCCTTCTACCCTCGCTCGCCCTACGGAGTCGCCAAGCTGTACGCCTTCTGG 86374 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| ||||| ||| |||||| ||| |||||||||||| Sbjct 86375 ATCGTCAAGAACTACCGCGAGTCGTACGGCATGTACGCGTGCAACGGTATCCTCTTCAAC 86434 Query 7412 CATGAATCACCGAGACGAGG-TGCAGACTTTGTCACAAAGAAGAT 7455 || || || || | || || ||| ||||||||| | ||||| Sbjct 86435 CACGAGTCCCCCCGCCGTGGCCGCA-CCTTTGTCACCAGAAAGAT 86478 >seq1695 Length=206671 Score = 113 bits (124), Expect = 5e-20 Identities = 207/299 (69%), Gaps = 6/299 (2%) Strand=Plus/Plus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||||||||| || || |||| ||| ||| | |||||||||||| Sbjct 118562 TTGATGATCAGACCCTTGATGTGCGATCCATCGTGATCCTGATCGGCCATGATCATGAGC 118621 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || ||| | || ||||| || | ||||||||| Sbjct 118622 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAGACTTTGCCCTGCTGCAAGCCCAAGATC 118681 Query 169280 TTCTTGAGATCG-TTGAACTCTTGGTTTGATGT--GAGCTGTGTGACAGAGGCATCGCGA 169336 | ||||| ||| ||||| ||| | | || ||| | || | | || || || Sbjct 118682 TGCTTGA--TCGCTTGAA-TCTCGACATTATCGAGGAGGGCTTTGCCCGCCGCTTCACGC 118738 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || |||| || || | |||||||||||| |||| || ||||| ||||||| Sbjct 118739 ACGTTGAGCAACTTTCCTCGCAAAGGGAAGACACCATAGTTGTCTCGACCGACGACGGCC 118798 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT 169455 ||||||| || ||||| | ||| || || || || ||||| | ||||||||| || || Sbjct 118799 AGACCCGACACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTT 118857 >seq1880 Length=81946 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 94846 TCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGC 94905 || || |||||| | | || | ||||||||| || ||||| |||||||| || ||||| Sbjct 66021 TCAGGCTCCTTCGCCTCCATCTTTTGGCTCAAAAAACGAGGCCTCATGCCCGGCCTCTGT 65962 Query 94906 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCA 94943 |||||||||||||| || || || ||||| || || || Sbjct 65961 TTCTCCAACGAGCTCATATCCCGCGACGAAGGTCTTCA 65924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583233641919000