Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016695.1_202016-07-08] 3,725 sequences; 23,646,746 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2237 120 3e-22 seq2102 113 4e-20 seq2638 105 6e-18 seq2027 96.9 3e-15 >seq2237 Length=56155 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 || ||| || || || || ||||| || |||||| | || || || || || || |||| Sbjct 39751 CAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTC 39692 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | ||||| || || |||||||| |||||||| || || || || Sbjct 39691 CGACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 39632 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | || | ||||||||| || | || || | ||| | |||| ||||| Sbjct 39631 GCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAA 39572 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||||||| | || ||||| | || | || ||||| || Sbjct 39571 CATCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGCCTCCGAGGTGGTAT 39521 >seq2102 Length=107014 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | || || || || || || | || Sbjct 67943 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 67884 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || ||||||||||| |||||||| || || || || Sbjct 67883 GACACGATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 67824 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| ||||| || | || || | || | | ||||||||| Sbjct 67823 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 67764 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||||||||| | || ||||| ||||| | || ||||| Sbjct 67763 ATTCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGG 67717 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||||||||| | || || || || || || | || Sbjct 68399 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 68340 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || |||||||| || || || || || || ||| Sbjct 68339 GACACGATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 68280 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||| || | || || | || | | ||||||||| Sbjct 68279 CAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 68220 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || ||||| | ||| | || ||||| || Sbjct 68219 ATTCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGCGGTGGTAT 68170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || || || |||||| | || || || || || || | || Sbjct 68171 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 68112 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || |||||||| || || || || || || ||| Sbjct 68111 GACACGATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 68052 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || ||||| || | || || | || | | ||||||||| Sbjct 68051 CAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 67992 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| | || ||||| | ||| | || ||||| || Sbjct 67991 ATTCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGTGGTGGTAT 67942 >seq2638 Length=73519 Score = 105 bits (116), Expect = 6e-18 Identities = 159/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 |||| || || || || || || || |||||| | || || || || || || |||||| Sbjct 4067 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 4008 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || |||| || | ||||| || || || ||||| |||||||| || ||||| || | Sbjct 4007 ACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAGC 3948 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 | ||| | || | |||||||| || | || || | || | | |||||||||| Sbjct 3947 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAACA 3888 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 | |||||||||||||| | || ||||| | || |||| ||||| Sbjct 3887 TCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGG 3842 >seq2027 Length=89189 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | ||||||||| | || || ||||| || || | || Sbjct 8637 ATGCAAATCTTTGTCAAGACCTTAACCGGCAAGACGATCACGCTTGAGGTTGAGTCCTCG 8696 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || || ||||| || || || ||||| || || || ||| Sbjct 8697 GACACGATCGACAACGTAAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCAA 8756 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATTAC 27164 || ||| | || | ||| ||||| || | || || | || || || |||||||| Sbjct 8757 CAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCG---CCGATTAC 8813 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||||||||| | || ||||| | || | || ||||| || Sbjct 8814 AACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGCCTCCGAGGTGGTAT 8866 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||| |||||| | || || || || || || | || Sbjct 8865 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACGATCACGCTCGAGGTTGAGTCCTCG 8924 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || ||||| ||||| || ||||| || || || ||| Sbjct 8925 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 8984 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGA---CAGTTCGACCGTTTCCGATTAC 27164 || ||| | || | ||| ||||| || | || || | || || || |||| ||| Sbjct 8985 CAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCG---CCGACTAC 9041 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||||||||| | || ||||| | ||| | || || || Sbjct 9042 AACATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGG 9091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434898149112000