Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016705.1_202016-07-09] 18,459 sequences; 26,753,668 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 194 2e-44 seq652 123 3e-23 seq13902 118 1e-21 seq18313 98.7 1e-15 seq1188 98.7 1e-15 >seq10 Length=64784 Score = 194 bits (214), Expect = 2e-44 Identities = 177/223 (79%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 |||||| ||||| ||||| || || ||||||| ||| ||| |||||||||||||||||| Sbjct 34143 GTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTGTCCAAGGACAT 34084 Query 116707 GAGCGACTGGGAGCGCTTGAACGA---CAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||||| | | | | | |||||||| | |||||| |||||| || || Sbjct 34083 GCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCTCGCACGTCCTCGC 34024 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||||||||||||| ||||||||||||||||||||| |||||||||| ||| || || Sbjct 34023 CTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGA 33964 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| ||| |||||||| || ||||||||||| ||||| ||| Sbjct 33963 GGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 33921 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 ||||| |||| || ||||||||||| || ||| | |||||||| |||| ||| |||| Sbjct 33424 TTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTCTCCAAC 33365 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||||||||| | |||||||| || || ||||||||| || Sbjct 33364 GAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTG 33321 >seq652 Length=10460 Score = 123 bits (136), Expect = 3e-23 Identities = 168/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| |||||||||| | ||| | ||||| || ||| ||| ||| ||| | ||||| Sbjct 9724 ATTTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 9665 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 || ||| | ||||||| | | | | ||| || |||| ||| | || ||| Sbjct 9664 GGCAGCGACCTCAACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 9605 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| |||||||| || || |||| || ||||| |||| ||| | Sbjct 9604 CACGTGCTCGCCTTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAACTTGGTTGAGAGG 9545 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| | ||||||||| | ||||||||| ||||||| || |||||||||||| Sbjct 9544 TTCTCAAGTGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGCTTTCAGATC 9491 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 |||||| |||| |||||||| || ||||| ||||||||||| ||||| ||||| |||| Sbjct 9030 TTCGCCTCCATCTTTTGGCTTAAAAAACGAGGCCTCATGCCTGGCCTCTCTTTCTCCAAC 8971 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||||||| ||| | ||||| ||||| ||| ||| || ||| | |||||| ||| Sbjct 8970 GAGCTCATATCCCGCGACGAAGGTCTTCATACCGAATTCGCCGTCCTCTTGTTCAGTCAT 8911 Query 117206 TTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCAT 117264 ||| || |||| | | || | || | |||||| | || ||||||| || Sbjct 8910 TTGAACAAGAGACCAGGTCAAGGATTGGTGCATCG-GATCGTGAAGGAGGCGGTCGATAT 8852 Query 117265 CGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298 |||| || ||| | ||||| || ||||| ||| Sbjct 8851 CGAGAAGGAGTTCTTGACCGAGGCTCTGCCTGTG 8818 >seq13902 Length=235 Score = 118 bits (130), Expect = 1e-21 Identities = 143/192 (74%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 |||||||| || ||||| |||| ||||| || | |||| | | |||| ||||| Sbjct 1 ACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGACACGATCGACAACG-TCAAGAC 59 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | || || |||||||| ||| | ||||| ||||| ||||||| ||| ||||| Sbjct 60 CAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAACAACGTCTCATCTTCGCTGGCAA 119 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | ||||| ||| ||| |||||||||||||||||| | ||||| || Sbjct 120 GCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATCCAGAAGGAGTCGACGCTCCA 179 Query 40893 TCTAGTGTTGCG 40904 | ||| |||| Sbjct 180 CTTGGTGCTGCG 191 >seq18313 Length=201 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| || |||| ||||| || ||||| ||| | |||||||| ||| | || Sbjct 15 AACG-TCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAGCAGCGATTGAT 73 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||| ||||| ||||| || || | ||||| ||| ||| ||||| ||||||||||| Sbjct 74 CTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAATATCCAGAAGGA 133 Query 40881 GGCCACGCTGCATCTAGTGTTGCG 40904 | | ||||| || | ||| |||| Sbjct 134 GTCGACGCTCCACTTGGTGCTGCG 157 >seq1188 Length=4438 Score = 98.7 bits (108), Expect = 1e-15 Identities = 109/144 (76%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 40761 AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCAT 40820 |||| ||||| || |||| ||||| || ||||| ||| | |||||||| ||| | || Sbjct 15 AACG-TCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAGCAGCGATTGAT 73 Query 40821 CTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGA 40880 || ||||||||| ||||| || || | || || ||| || ||||||||||||||||| Sbjct 74 CTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAACATCCAGAAGGA 133 Query 40881 GGCCACGCTGCATCTAGTGTTGCG 40904 | | ||||| || | ||| |||| Sbjct 134 GTCGACGCTCCACTTGGTGCTGCG 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515100319609840