Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016705.1_202016-07-09] 18,459 sequences; 26,753,668 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq846 251 7e-62 >seq846 Length=7932 Score = 251 bits (278), Expect = 7e-62 Identities = 733/1123 (65%), Gaps = 23/1123 (2%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | ||||||| ||||||||| || || || ||| | || || || |||| | Sbjct 5841 TACAACTACTTTGGCTTCAAAACGCTCGAACGCTCCTACTTGCTTCGCATCGACGGCAAG 5782 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || |||| || ||||| || |||| ||||| |||||| |||| || ||||| |||||| Sbjct 5781 GTCGCCGAACGCCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGAC 5722 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTA---TACCATGGCC 93894 || | || |||| | | | || || | | | || | || |||| ||| Sbjct 5721 ATTGAGCGCGTCTTGCAGTCGTACA---ACCTTATGTCCGAGCGCTACTTTACCCACGCC 5665 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATG 93954 | ||||| || |||||||| || || || || ||| | || || ||||||||| | Sbjct 5664 TCGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTC 5605 Query 93955 ACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATC 94014 |||| |||| || || || || |||| ||||| || ||| || ||| |||| Sbjct 5604 ACGATGAAGGATGATTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATC 5545 Query 94015 TCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTAC 94074 || || ||| || || ||||| | || ||||| || | || || | || |||||| Sbjct 5544 TCCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCCTAC 5485 Query 94075 ATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAAC 94134 ||| ||| || || ||| ||| |||||| | ||||| |||||||| |||| ||||||| Sbjct 5484 ATCGCCGGCACAAACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAAC 5425 Query 94135 GCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTC 94194 | ||||||||||| ||||| ||||| | | | || | |||||| |||| ||| Sbjct 5424 ACCGCGCGCTACGTCGACCAAGGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTC 5365 Query 94195 GAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGAT 94254 ||||| |||||||| ||||| | ||| | ||||| || |||||||||||||| || Sbjct 5364 GAGCCGTGGCACGCCGACGTCTTCGAATTCCTGGACCTTCGCAAGAACCACGGCAAGGAG 5305 Query 94255 CTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGC 94314 | | || | || ||||||| || |||||| | || || ||||| ||| | || Sbjct 5304 GAAGTTCGCGCTCGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGT 5245 Query 94315 GTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGAC 94374 |||||| | || ||| ||| || || ||| ||| ||||| || ||| Sbjct 5244 GTCGAGGCCGCCGGCGATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAA 5185 Query 94375 GTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGG 94434 || | ||| | || | ||||| | |||||| | ||||| |||| | Sbjct 5184 GTCTATGGCGAGGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAG 5125 Query 94435 AAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGGT 94494 || || || ||||| ||| | ||| | || | ||||| || || || Sbjct 5124 AAAACGATCCCCGCGCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGC 5065 Query 94495 ACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGG 94554 | || | || | | ||| ||| | | ||| || || ||||| || | || || Sbjct 5064 AACCCTTTTATGCTCTACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGC 5005 Query 94555 GTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGATT 94614 ||||||| ||||| |||||||||||||| ||||||| | | ||||||||| Sbjct 5004 ACGATCAAGTCGTCGAACCTGTGCACCGAGATCATCGAGTACTCGGCGCCGGACGAGTGC 4945 Query 94615 GCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACACGTCT 94674 || || || ||| ||| ||| ||| || | | ||| | | || | | ||| | Sbjct 4944 GCCGTCTGCAACTTGGCCTCGATCGCGTTGCCGAGCTTCAT-CAAG--GAC--GGCGTGT 4890 Query 94675 ACTGCTTCGTTCG-ATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGAACCT 94733 || ||| | | | || | ||| | || || ||| | | || ||| | Sbjct 4889 ACGACTT--TAAGAAGTTGCACGAGGTCGTCAAGGTCG---------TCGCTTTCAACTT 4841 Query 94734 GAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAA 94793 |||| | | |||||| |||| ||| |||||| |||||| | ||||| ||| | Sbjct 4840 GAACCGCATCATCGACGTCAACTACTATCCCGTCATCGAGGCGCAAAACTCCAACTTCCG 4781 Query 94794 GCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCG 94836 || || |||||||||||||| || || ||| |||| |||||| Sbjct 4780 CCACCGCCCCATCGGCATCGGAGTGCAAGGTCTCGCCGACGCG 4738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494609048805640