Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016705.1_202016-07-09] 18,459 sequences; 26,753,668 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq846 192 9e-43 seq10 116 6e-20 seq652 111 2e-18 seq5492 107 3e-17 seq1297 105 1e-16 seq1476 87.8 3e-11 seq183 86.0 1e-10 >seq846 Length=7932 Score = 192 bits (212), Expect = 9e-43 Identities = 198/259 (76%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 5405 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAG 5464 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 5465 TAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 5524 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||| ||||| || Sbjct 5525 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCA 5584 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||| || ||||||| | ||| || || ||||| |||||| | | ||| ||| Sbjct 5585 ATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCG 5644 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 5645 GCGTTGAAGAGCGTCGGCG 5663 Score = 136 bits (150), Expect = 6e-26 Identities = 296/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||||||| | |||| | | ||||| || ||| Sbjct 4955 GGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTCGACGACTTGATCGTGCCAAGATTC 5014 Query 2071624 TGCTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCG 2071683 | ||||| || ||| ||||||| |||| ||||| | || || || ||| Sbjct 5015 TTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCG 5074 Query 2071684 ATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGG 2071743 | ||| || | || || |||||| | ||||||| | || || | |||||| Sbjct 5075 ACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGG 5134 Query 2071744 CCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGG 2071803 |||| | | |||| || | |||| | | ||||| ||| Sbjct 5135 CCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGG 5194 Query 2071804 CCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATA 2071863 ||||| || |||| ||||| ||||| | ||| |||||| | | | | || || ||| Sbjct 5195 CCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATG 5254 Query 2071864 AACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCG 2071923 || || ||| |||| || | | |||||||| || || || |||||||||||| Sbjct 5255 AAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCG 5314 Query 2071924 TGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAG 2071983 |||||||| ||||| || | |||| || |||||||||||||||||| |||||| Sbjct 5315 TGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATC 5374 Query 2071984 GCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 5375 GCGAAGGCTCCGGGACGCTTGTTGCCACC 5403 Score = 102 bits (112), Expect = 1e-15 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || |||| | ||| ||||||| ||||||||||| Sbjct 3805 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCCCGCGTGCGCAAGTAGTACATGCCC 3864 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGA--TGGACTCGGCATTCG 2069368 ||||| || || | ||| ||||| |||||||||||||| || | | | || | Sbjct 3865 GTCTTCAGTCCTCTCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGCGC-CATCGTTGG 3923 Query 2069369 GGACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCG 2069428 | || || ||| || ||| ||||| || |||||| | ||| | |||||||| | Sbjct 3924 GCTCGACA-AGTGGATGTTAAGCGATTGCGACTGGTCAATGAAGGCACCTCGGTCGGCGG 3982 Query 2069429 CCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAGA 2069487 || |||||| | | | ||| || | |||||| ||||||||| | | |||||||||| Sbjct 3983 ACAAGTCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGA 4041 Query 2069488 T 2069488 | Sbjct 4042 T 4042 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| |||||| ||| | Sbjct 4654 CGCGGCGTGGTAGATGGTCTCGAAGATT-TGCTTGTTGAGCTTACGCGCCTCGGGCGAAT 4712 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 4713 CGAACGGCATCGCCA--AGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 4770 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | |||||| || || |||| ||||| |||||| Sbjct 4771 GGGGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 4830 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 4831 GATGCGGTTCAAGTTG 4846 >seq10 Length=64784 Score = 116 bits (128), Expect = 6e-20 Identities = 145/198 (73%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| | |||||||| ||| || || ||| |||||| ||||||||| Sbjct 33946 GCCTCGGCTGACTGGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACGATGCCG 34005 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||| ||||||||||||||||||||||||| ||| |||| ||||||||| ||||| Sbjct 34006 TCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGC 34065 Query 796270 ---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | | |||| | ||||| | ||| |||||||||||||| || Sbjct 34066 TTGTTGTCCCAGTCGTGCATGTCCTTGGACAGGTCCATCTCTTCGGCGGTCCAAAAAGAT 34125 Query 796327 GCCTCGGCCTTTTTGTAC 796344 ||||| ||||| |||||| Sbjct 34126 GCCTCAGCCTTCTTGTAC 34143 >seq652 Length=10460 Score = 111 bits (122), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTC-CTTCATGAAGCGGCCGGCCAGGTTCTCAG 796198 ||| ||||| ||||||| | || ||||| ||| | ||| | | ||| ||||||| Sbjct 9506 AAAGCACCTCGCCTCGGCGAACTGCACCTCACTTGA-GAACCTCTCAACCAAGTTCTCAT 9564 Query 796199 CCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGT 796258 ||||| || || |||||||| |||||||| ||||| |||||||| || |||| Sbjct 9565 TCACGACCCCATCCGAAGCGGCGAAGAAGGCGAGCACGTGGGCGATAAAGTAGCGTTCGT 9624 Query 796259 CGTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGG 796315 ||| | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 9625 CGTTGTTGAGCTTGTGGTGCCAGTCGTTGAGGTCGCTGCCGAGGTCGATCTCTTCGGCGG 9684 Query 796316 TCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| || | ||| | ||||||||| |||| ||| Sbjct 9685 ACCAAAAGGACGCTTGGGCTTGTTTGTACATGGCCCAAATC 9725 >seq5492 Length=453 Score = 107 bits (118), Expect = 3e-17 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 1485493 CCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGG 1485552 || || |||| ||||||| ||| ||| || ||| | | ||||| || || | ||||||| Sbjct 451 CCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGG 392 Query 1485553 ATCTCGCGGGTGCCGA---TCGTGTTGCGCTTGTTAGTGCGCGCCAGGCGGCCGGCCTCG 1485609 |||||||| | || ||| ||| | |||| || ||| || || || ||| Sbjct 391 ATCTCGCGCGACGAGATAGTCGCCTTGTGGTTGTAGGT---CGCGAGCTTGCACGCTTCG 335 Query 1485610 GTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATTTGTTG 1485669 || |||||| || | || |||||||| |||||||| | |||| ||||| ||||| Sbjct 334 ATGGTGATGCGCTCAAAGATATCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTC 275 Query 1485670 GAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| || ||||||||| || ||||| | ||||||| Sbjct 274 GAGATACCGGTGTCGGGGTGGACTTGCTTCAACACCTTG 236 >seq1297 Length=3700 Score = 105 bits (116), Expect = 1e-16 Identities = 160/225 (71%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 1485487 TTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCG 1485546 ||||| || || |||| ||||||| ||| || ||| || | | ||||| ||| || | Sbjct 2573 TTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCAGGGAGGATCAAGCGAACCGAA 2632 Query 1485547 GTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGCCG 1485603 |||||||||||||| | |||||| ||| | |||| | |||||| || | Sbjct 2633 GTCTGGATCTCGCGCGACGTGATCGTCGCCTTGTGGTTGT-ATTGCGCG--AGCTTGGAC 2689 Query 1485604 GCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGAT 1485663 |||||| | |||||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 2690 GCCTCGAGGGTGATGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATTAGCATCGCC 2749 Query 1485664 TTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| ||| ||||||||| || || | | ||| ||| Sbjct 2750 TTGTTCGAGATACCCGTGTCGGGGTGAACTTGTCTCAACACTTTG 2794 >seq1476 Length=2721 Score = 87.8 bits (96), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||||||||||||||| || ||||||| ||||||| ||| || || ||| | | || Sbjct 105 ACTTGGTGACGGCCTTGGTTCCTTCTGAGATGGCGTGCTTGGACAACTCTCCGGGGAGGA 46 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCG 1485560 | ||||| || | |||||||||||| || Sbjct 45 TGAGGCGGACCGAGGTCTGGATCTCTCG 18 >seq183 Length=25100 Score = 86.0 bits (94), Expect = 1e-10 Identities = 170/252 (67%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | ||| ||||| || || || || || Sbjct 20543 GACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCGGGT 20484 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 ||||||||| | ||||||||||||| ||||| | | || ||| |||||||| || Sbjct 20483 CGCCACAAGCTCGTCATCCTCGATGAAGCCGATTCGATGACCCCGGGAGCCCAGCAAGCG 20424 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 ||||| ||| ||||||| | | ||| ||| || || || || | || |||||| | Sbjct 20423 CTCCGCAGGACGATGGAAATATTCTCCAGCACCACTCGCTTCGCCTTTGCGTGCAACCAG 20364 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | | ||||| || |||||||||||| | | || | || Sbjct 20363 AGCAACAAGATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTG 20304 Query 2019387 ACCGACGCCCAG 2019398 ||||| ||| || Sbjct 20303 ACCGATGCCGAG 20292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914282831978501