Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016705.1_202016-07-09] 18,459 sequences; 26,753,668 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq13902 165 2e-35 seq18313 118 2e-21 seq1188 118 2e-21 seq776 113 9e-20 seq16180 109 1e-18 seq908 96.9 7e-15 seq891 93.3 9e-14 seq403 89.7 1e-12 seq393 86.0 1e-11 seq293 86.0 1e-11 >seq13902 Length=235 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || || ||||||||||| || || Sbjct 204 ACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 145 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || || ||||| | |||||||||||| || Sbjct 144 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGG 85 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 84 AATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 25 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||||||||| ||||| Sbjct 24 CTCGAGCGTGATCGTCTTGCCCGT 1 >seq18313 Length=201 Score = 118 bits (130), Expect = 2e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || || ||||| ||||| || || Sbjct 170 ACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGC 111 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || || |||||||| || || ||||| || Sbjct 110 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGG 51 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||| || |||||||| || ||||| | || ||| | ||||| ||||||| Sbjct 50 AATGCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCG 1 >seq1188 Length=4438 Score = 118 bits (130), Expect = 2e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || || ||||||||||| || || Sbjct 170 ACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGC 111 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||||||||| || || || || || |||||||| || || ||||| || Sbjct 110 GAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGG 51 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 ||| || |||||||| || ||||| | || ||| | ||||| ||||||| Sbjct 50 AATGCCTTCCTTGTCCTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCG 1 >seq776 Length=8776 Score = 113 bits (124), Expect = 9e-20 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| |||||||||||||||||||| || || ||| | ||||| |||||||| | ||| Sbjct 8768 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 8709 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| ||||||||||| || |||| ||||| ||||| || ||||| Sbjct 8708 ACCTCGAGCGTGATCGTCTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 8659 >seq16180 Length=216 Score = 109 bits (120), Expect = 1e-18 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| |||||||||||||||||||| || || ||| | ||||| |||||||| | ||| Sbjct 9 GGAATGCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCG 68 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || |||||||| || |||| ||||| ||||| || ||||| Sbjct 69 ACCTCGAGCGTAATCGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 118 >seq908 Length=7161 Score = 96.9 bits (106), Expect = 7e-15 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 282997 CCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGA 283056 ||||||| || |||||||| | || ||| | ||||| |||||||| | ||||| |||| Sbjct 1 CCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGA 60 Query 283057 GAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||||||||| ||||| | || |||||||| |||||||| Sbjct 61 GCGTGATCGTCTTGCCCGTAAGCGTTTTAACGAAGATCTGCAT 103 >seq891 Length=7314 Score = 93.3 bits (102), Expect = 9e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 ||| || || ||||||||||||||||| | || ||| | ||||| ||||| || | || Sbjct 7310 CGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTC 7251 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||| ||||| ||||||||||| ||||| | |||||| || || || ||| Sbjct 7250 GACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACAAAGATTTGC 7202 >seq403 Length=15966 Score = 89.7 bits (98), Expect = 1e-12 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 316183 TAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 316242 |||||||| ||||||||||| | | |||| | || || || |||||||| |||||||| Sbjct 2146 TAACGCCACTGGATGTACTGCATCGCCGTCTTCTCGAGGTGCTCCTCGATATGGTGGAAC 2205 Query 316243 GCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTC 316284 ||||| || |||||||| || | ||||| || || |||||| Sbjct 2206 GCGTGTTGGGCCACGTACGCGACACGCAAGTTGGGGTGCTTC 2247 >seq393 Length=16264 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 282989 CGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTC 283048 ||| || || ||||||||||||||||| | || ||| | ||||| ||||| || | || Sbjct 5 CGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTC 64 Query 283049 GACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||| ||||| ||||| ||||| ||||| | ||||| || || || |||| Sbjct 65 GACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATTTGCA 114 >seq293 Length=20000 Score = 86.0 bits (94), Expect = 1e-11 Identities = 432/679 (64%), Gaps = 12/679 (2%) Strand=Plus/Plus Query 273516 TTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATCAGTCGCTCC 273575 ||||| || |||||| || | ||| | | |||| ||||| ||||| ||| Sbjct 9114 TTGAATCCACGGTACCAAGGGTGCATCGGTTCCATCTCCTCACCTCTCATCTTGCGCCTT 9173 Query 273576 ACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCA 273635 | || | | |||||| | ||||||||| | || || | | ||| || || ||| Sbjct 9174 AAGTTGGCCACAATATCCGTCGGGTTGTAATTGGGCACCGATGAACTCCATCCCGTTCCA 9233 Query 273636 ATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCA 273695 ||||| || ||||| |||| | | ||||| || |||| || | ||||| Sbjct 9234 ATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACCAAGACGGCTCG 9293 Query 273696 ATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCA-TCATCCGTATCAACGAAAAC 273754 || | | ||||| |||| ||||| ||| | | || ||||| | | ||| || Sbjct 9294 ATGCTTTGCCCATCATCGTTGAGGTA-TTCGAGCACGCTGTCATCAGCGGGATGGAAGAC 9352 Query 273755 CTTTCGCGTCT--GAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTG 273812 | ||||| || ||| | |||||||| ||||| | || || ||| || Sbjct 9353 GCTACGCGTGATGGATGATACG--TTCGTGAAGATGTAACGAGCCGAAGCCGCGTCTTTA 9410 Query 273813 CCACCTTGCAGCCTCGAACCAAACTGACC-CTCGGGCAGTAGCCAGTTTATGTTGTTGCT 273871 ||||||||||| | || |||||| ||||| ||||| | || ||| | ||||||| Sbjct 9411 CCACCTTGCAGACGCGTACCAAATTGACCGTTCGGGTCG-AGAATGTTGAGGTTGTTGGA 9469 Query 273872 ACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTG 273931 |||||| | | || |||| | ||| || || || | | || ||||| || Sbjct 9470 CCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATTTCACCGTGATG 9529 Query 273932 ATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAA 273991 || || ||| ||||||| ||||| | || || | ||||| | || |||||| Sbjct 9530 GTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATCTCCTGCGTCAA 9589 Query 273992 GTTTCGCTTGAA--TGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 || |||||||| | || |||| ||||| || || ||||| |||||||||| | Sbjct 9590 CTTGCGCTTGAAGCAACCGA--ACAAGACCTTGCGTTGACCCGGCTTAAACCCATCAATG 9647 Query 274050 ACCGATGGAATACTGCGTTCCAAATCATACCGAGAGAACAAAATCAGTTCCTTGTCAATG 274109 || || |||||| ||| | || | ||||| | |||| ||||||| ||| Sbjct 9648 ACAGAGGGAATAGAGCGCACGTTGTCGGCCATCGAGAAGAGGATCAACTCCTTGTTGATG 9707 Query 274110 AAGTCAGGGACGGGAACCTCGGGCTTCTTGTGGTCGAGCTGATTACCGGGTTCGTATGCC 274169 || || || || || |||| | |||||||||| | | ||||| || | | Sbjct 9708 AAATCCTCGATCGGGACTTCGGCGATGCTGTGGTCGAGGTACGTGCCGGGGACGAAGCCT 9767 Query 274170 AACATCCACTCCTTGCGGT 274188 | ||| |||||||||| Sbjct 9768 CGGAGCCATTCCTTGCGGT 9786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046491639964186