Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016705.1_202016-07-09] 18,459 sequences; 26,753,668 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq13902 107 1e-18 seq18313 98.7 7e-16 seq1188 93.3 3e-14 >seq13902 Length=235 Score = 107 bits (118), Expect = 1e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| ||| ||||| |||||| |||||||||||||| Sbjct 207 CATACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATC 148 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| ||| | || || |||||||| || || ||||| | ||| || || |||| Sbjct 147 GGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGG 88 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | || ||||| ||| ||||| ||| | | | || ||||| | ||| || Sbjct 87 GGGAATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTC 28 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGT 44313 ||||| | ||| |||||||| ||||| Sbjct 27 GACCTCGAGCGTGATCGTCTTGCCCGT 1 >seq18313 Length=201 Score = 98.7 bits (108), Expect = 7e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || | || | || ||||| ||| ||||| |||||| ||||| |||||||| Sbjct 173 CATACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATC 114 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 |||||| ||| | || || |||||||| || || |||||||| |||||||| |||| Sbjct 113 GGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGG 54 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTT 44253 || | |||||||| ||| ||||| Sbjct 53 GGGAATGCCTTCCTTGTCCTGAATCTT 27 >seq1188 Length=4438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 || ||||| ||| ||||| |||||| |||||||||||||| ||||| || | || Sbjct 155 CAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTACGGCCATC 96 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 || |||||||| || || |||||||| |||||||| |||| || | |||||||| || Sbjct 95 CTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 36 Query 44245 CGTTATCTT 44253 | ||||| Sbjct 35 CTGAATCTT 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359909413297203