Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016705.1_202016-07-09] 18,459 sequences; 26,753,668 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq18313 114 3e-20 seq1188 114 3e-20 seq891 86.0 2e-11 >seq18313 Length=201 Score = 114 bits (126), Expect = 3e-20 Identities = 115/148 (78%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||| |||||||| |||||||||||||| ||||| || || || |||||| Sbjct 3 GACACGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 62 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | |||||||| || || |||||||| ||||| | || || |||||||| || Sbjct 63 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 122 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 123 ATCCAGAAGGAGTCGACGCTCCA-CTTG 149 >seq1188 Length=4438 Score = 114 bits (126), Expect = 3e-20 Identities = 115/148 (78%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| ||||| |||||||| |||||||||||||| ||||| || || || |||||| Sbjct 3 GACACGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 62 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || ||| | |||||||| || || |||||||| ||||| | || || || ||||| ||| Sbjct 63 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAAC 122 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTG 178128 |||| || || || || || || |||| Sbjct 123 ATCCAGAAGGAGTCGACGCTCCA-CTTG 149 >seq891 Length=7314 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||||| || || || ||||||||||||||||| || || ||| Sbjct 7203 CAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGAC 7262 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 || ||||| |||||||| ||||| || ||||| ||||| ||||| || Sbjct 7263 ACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCC 7312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203446510424046