Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016715.1_202016-07-08] 4,467 sequences; 26,210,450 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3410 194 2e-44 seq1246 134 1e-26 seq1242 127 2e-24 seq1119 127 2e-24 seq1888 125 7e-24 seq1704 123 3e-23 seq1535 118 1e-21 >seq3410 Length=201353 Score = 194 bits (214), Expect = 2e-44 Identities = 177/223 (79%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 |||||| ||||| ||||| || || ||||||| ||| ||| |||||||||||||||||| Sbjct 60993 GTACAAGAAGGCTGAGGCATCTTTTTGGACCGCCGAAGAGATGGACCTGTCCAAGGACAT 61052 Query 116707 GAGCGACTGGGAGCGCTTGAACGA---CAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||||| | | | | | |||||||| | |||||| |||||| || || Sbjct 61053 GCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCTCGCACGTCCTCGC 61112 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||||||||||||| ||||||||||||||||||||| |||||||||| ||| || || Sbjct 61113 CTTTTTCGCCGCCTCCGACGGCATCGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGA 61172 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| ||| |||||||| || ||||||||||| ||||| ||| Sbjct 61173 GGTCCAGTCAGCCGAGGCTCGATGCTTCTACGGTTTTCAAATC 61215 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 ||||| |||| || ||||||||||| || ||| | |||||||| |||| ||| |||| Sbjct 61712 TTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTCTCCAAC 61771 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||||||||| | |||||||| || || ||||||||| || Sbjct 61772 GAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTG 61815 >seq1246 Length=48807 Score = 134 bits (148), Expect = 1e-26 Identities = 153/203 (75%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || ||||||||||| ||||||||| |||| ||||| | ||| Sbjct 4068 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 4009 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | |||| ||||| || || | ||||| || |||||||| | |||||| Sbjct 4008 ACACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAG 3950 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| ||||| || || | |||||| | |||||||||| Sbjct 3949 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 3890 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 3889 ATCCAAAAGGAGTCGACCCTCCA 3867 >seq1242 Length=66383 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 349 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 290 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 289 GACACGATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 231 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 230 GCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 171 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 170 TATCCAGAAGGAGTCGACGCTGCA 147 >seq1119 Length=14013 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| || | Sbjct 255 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 314 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || || | ||||| |||||||| || | ||||| Sbjct 315 GACACGATCGACAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCA 373 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| || ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 374 GCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 433 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 434 TATCCAGAAGGAGTCGACGCTGCA 457 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| || ||||| |||| ||||| | | Sbjct 27 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 86 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||||| || |||| ||||| |||||||| || | |||||| Sbjct 87 GATACGATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 146 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | |||| ||| ||||| ||||| || || | ||||| ||| ||| ||||| Sbjct 147 CAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAT 206 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||| | |||||||| Sbjct 207 ATCCAGAAGGAGTCGACGCTGCA 229 >seq1888 Length=70466 Score = 125 bits (138), Expect = 7e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 40705 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AAC 40763 || ||||| |||||||| || ||||| |||| ||||| || | |||| | | ||| Sbjct 3 AAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGACACGATCGACAAC 62 Query 40764 GCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTA 40823 | ||||| || || | || || |||||||| ||| | ||||| ||||| ||||||| Sbjct 63 G-TCAAGACCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAACAACGTCTCATCTT 121 Query 40824 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGC 40883 ||| ||||| ||||| || || | ||||| ||| ||| |||||||||||||||||| | Sbjct 122 CGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATCCAGAAGGAGTC 181 Query 40884 CACGCTGCATCTAGTGTTGCG 40904 ||||| || | ||| |||| Sbjct 182 GACGCTCCACTTGGTGCTGCG 202 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || ||||| |||||||| || ||||| |||| ||||| | | Sbjct 216 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 275 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| ||||| || |||| ||||| || ||||| ||| | ||||| Sbjct 276 GACACGATCGACAACG-TCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 334 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | |||| ||||||||| ||||| || || | || || ||| || ||||| Sbjct 335 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 394 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||| | ||||| || | ||| |||| Sbjct 395 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCG 430 >seq1704 Length=108281 Score = 123 bits (136), Expect = 3e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 40692 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGA 40751 |||||| || || || || || |||||||| || |||||| |||| ||||| | |||| Sbjct 55613 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 55672 Query 40752 CAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGC 40810 || | | |||| ||||| || || | ||||| || |||||||| | ||||||| Sbjct 55673 CACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 55731 Query 40811 AACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 40870 |||| ||||||| || ||||| ||||| || || | |||||| | ||||||||||| Sbjct 55732 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 55791 Query 40871 TCCAGAAGGAGGCCACGCTGCA 40892 |||| |||||| | || || || Sbjct 55792 TCCAAAAGGAGTCGACCCTCCA 55813 >seq1535 Length=208129 Score = 118 bits (130), Expect = 1e-21 Identities = 167/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| |||||||||| | ||| | ||||| || ||| ||| ||| ||| | ||||| Sbjct 29058 ATTTGGGCCATGTACAAACAAGCCCAAGCGTCCTTTTGGTCCGCCGAAGAGATCGACCTC 28999 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCTTG---AACGACAACGAGCGCCATTTCATCAAG 116752 || ||| ||||||| | | | | ||| || |||| ||| | || ||| Sbjct 28998 GGCAGCGACCTCCACGACTGGCACCACAAGCTCAACAACGACGAACGCTACTTTATCGCC 28939 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||||||| ||||| |||||||| || || |||| || ||||| |||| ||| | Sbjct 28938 CACGTGCTCGCCTTCTTCGCCGCTTCGGATGGGGTCGTGAATGAGAACTTGGTTGAGAGG 28879 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| | ||||||||| | ||||||||| ||||||| || |||||||||||| Sbjct 28878 TTCTCAAGTGAGGTGCAGTTCGCCGAGGCGAGGTGCTTTTATGGCTTTCAGATC 28825 Score = 104 bits (114), Expect = 2e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 |||||| |||| |||||||| || ||||| ||||||||||| ||||| ||||| |||| Sbjct 28364 TTCGCCTCCATCTTTTGGCTTAAAAAACGAGGCCTCATGCCTGGCCTCTCTTTCTCCAAC 28305 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||||||| ||| | ||||| ||||| ||| ||| || ||| | |||||| ||| Sbjct 28304 GAGCTCATATCCCGCGACGAAGGTCTTCATACCGAATTCGCCGTCCTCTTGTTCAGTCAT 28245 Query 117206 TTGGTGCAGCGACC-GAGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCAT 117264 ||| || |||| | | || | || | |||||| | || ||||||| || Sbjct 28244 TTGAACAAGAGACCAGGTCAAGGATTGGTGCATCG-GATCGTGAAGGAGGCGGTCGATAT 28186 Query 117265 CGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298 |||| || ||| | ||||| || ||||| ||| Sbjct 28185 CGAGAAGGAGTTCTTGACCGAGGCTCTGCCTGTG 28152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515190431447920