Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016715.1_202016-07-08] 4,467 sequences; 26,210,450 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1663 109 7e-19 >seq1663 Length=15306 Score = 109 bits (120), Expect = 7e-19 Identities = 403/625 (64%), Gaps = 10/625 (2%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 || || | ||| || ||||| |||||||| || || | || ||||| | | | | Sbjct 12614 ACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGAACT 12673 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || || ||||| ||| || ||||| | | | || | |||||||| Sbjct 12674 TCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTCGGCGTGCCACGGC 12733 Query 72142 TCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 72201 || | ||| || || | |||| || || ||||| || || || || | ||| | ||| Sbjct 12734 TCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCG 12793 Query 72202 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 72261 ||||| || || || | | ||| || | ||| || || || || || || |||| | Sbjct 12794 GTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCG 12853 Query 72262 ATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTA 72321 || ||| || | || || || ||| || | ||| || || || || | || Sbjct 12854 ATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACCACCGGCGGTCTTG 12913 Query 72322 GAGATTAATGCGCATCGTTTTAA-CGTATCATAGATGCCCTCTATACTATCATCCATCAT 72380 ||||| | ||||| ||| |||| ||| || || ||||| || || ||||||| |||| Sbjct 12914 GAGATGAGCGCGCA-CGTCTTAAGCGTGTCGTAAATGCCTTCAATCGAATCATCCTTCAT 12972 Query 72381 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 72440 | | || |||||| || | || | || ||||| || || || | || || Sbjct 12973 CGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGG 13032 Query 72441 AGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT-CAATAGCTGATTCTA 72499 || ||||| ||||| | || |||| || ||||||| || ||| | | | | | Sbjct 13033 CGAGGCGTGGGTAAAGTAGCGCTCGGACATAAGGTTGTACGACTGCAAGACGCGCT-CAA 13091 Query 72500 TATCCCATTGA---TGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAA 72556 | || ||| || || || || ||||||||||| | ||| || || || | ||| Sbjct 13092 TGTCG---TGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTGCGGGCGTTCGG 13148 Query 72557 CGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 72616 ||| |||| | || | ||||||||| ||| | ||||| || ||||| |||| Sbjct 13149 CGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGTTTTGAAGCCAAAGTAGT 13208 Query 72617 TGTATGAAAAGTCTCGTTCGTAAAT 72641 |||| || || || ||||| || Sbjct 13209 TGTAGCCGAAATCGCGGTCGTAGAT 13233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671101725264920