Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016715.1_202016-07-08] 4,467 sequences; 26,210,450 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1663 345 8e-90 seq3410 136 7e-27 >seq1663 Length=15306 Score = 345 bits (382), Expect = 8e-90 Identities = 844/1265 (67%), Gaps = 32/1265 (3%) Strand=Plus/Plus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 |||| ||||||| |||||||||||||||||| |||||| | | || |||| | Sbjct 12020 TCGATCGCGGCGTGGTAGATGGTCTCGAAGATTTGCTTGTTGAGCTTACGCGCCTCGGGC 12079 Query 244451 CAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCG 244510 | ||| || || ||| |||||| ||||||| || || ||||| ||||||||| Sbjct 12080 GAATCGAACGGCATCGCCAAGGCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCG 12139 Query 244511 ATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCG 244570 ||||| | ||| || ||||||| || ||| ||||| || ||||| ||||| Sbjct 12140 ATGGGGCGGTGGCGGAAGTTGGAGTTTTGCGCCTCGATGACGGGATAGTAGTTGACGTCG 12199 Query 244571 ATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 || | ||| | |||| | || | |||||| ||| || | || ||||||| Sbjct 12200 ATGATGCGGTTCAAGTTGAAAGCGACGACCTTGACGACCTCGTGCAACTTCTTAAAGTCG 12259 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 ||| || | |||| || ||| ||| ||| || | ||| |||| Sbjct 12260 TACACGCCG---TCCT------TGATGAAGCTCGGCAACGCGAT-----CGA----GGCC 12301 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 | |||||||||||| ||| |||| | ||||| || ||||||||||| ||||| Sbjct 12302 AAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCGGTGCACAGGTTC 12361 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 ||||||| ||||| || | || || || || || ||| |||||| |||||| Sbjct 12362 GACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCGGCGTCTTTGTAG 12421 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCCT 244869 ||||| || || || || |||| |||||| | || | ||| || ||| || | Sbjct 12422 AGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGC-GTACCAAAGCTTTTG 12480 Query 244870 AGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAA 244929 || || ||| | || |||||| ||||| | ||| ||| ||| Sbjct 12481 CGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAA 12540 Query 244930 CTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTC 244989 ||| ||| |||| |||| ||||||||| || ||||| | |||| ||| || Sbjct 12541 CTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGAAGAGAGGCCAATC 12600 Query 244990 GCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC 245049 |||| || ||| ||| | || |||||| || ||||| |||||||| || |||||| || Sbjct 12601 GCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCGCAAAGAAGAGATC 12660 Query 245050 CCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTC 245109 | | | || ||| ||| |||||| | || |||| || || |||||||| Sbjct 12661 ACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGAATTCGAAGACGTC 12720 Query 245110 GACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTC 245169 | ||||||| ||||| | ||||| |||| ||| ||||| ||||||||||| || ||||| Sbjct 12721 GGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTC 12780 Query 245170 CACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCC 245229 || | | || |||| ||| || || | || || |||||||| |||| ||| Sbjct 12781 GACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAATGCCGTTCGAGTAGCC 12840 Query 245230 GTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCC 245289 ||| ||||| |||||||| ||| | | | || |||| |||| || || | || Sbjct 12841 GTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCGATACC 12900 Query 245290 GCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCT 245349 |||||| |||||||||||| ||||| |||| | ||||| ||||| || || Sbjct 12901 ACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTCGTAAATGCCTTCAATCGA 12960 Query 245350 GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTT 245409 || |||||| ||| ||| || ||||| || ||||| || | || | | | ||| Sbjct 12961 ATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGGGTGAGGCGTTCCGGCGTT 13020 Query 245410 GAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTGGA 245468 ||| || || || ||||||||||||||||| |||| || | | ||||| ||| | Sbjct 13021 GAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGC-GCTCGGACATAAGGTTGTACGACTGCA 13079 Query 245469 GCAGA-GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTG 245526 ||| ||| || |||| || |||||||| | |||| | |||||| |||| || Sbjct 13080 --AGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGTTG 13137 Query 245527 -GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTCTT 245583 |||||| ||| | | || | ||| | |||| ||||||||| |||||||| || Sbjct 13138 CGGGCGT-TCG--GCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGTTCGAGCGTTTT 13194 Query 245584 GAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTCTC 245643 ||| |||||||| |||||| || ||| || || ||||||| || ||| | || Sbjct 13195 GAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGTAGATGACGGCGCTGTTGAGGCGGTC 13254 Query 245644 GGCGT 245648 ||||| Sbjct 13255 GGCGT 13259 >seq3410 Length=201353 Score = 136 bits (150), Expect = 7e-27 Identities = 188/260 (72%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | ||||| |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 61706 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCTTGATGCCCGGATTGACCTTC 61765 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| |||||| | |||||||| || || | |||||||| |||||| ||||| Sbjct 61766 TCCAACGAGCTCATCTCGCGTGACGAGGGCCTCCACACCGACTTTGCTTGCCTCTTGTTC 61825 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 || ||||||| || ||| |||| || ||| | |||||| | |||||| Sbjct 61826 TC---CCACCTCGAGC-GAAGGCCTCACCCCGACACCGTCGCGCTCATCATTAAGGAGGC 61881 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 ||| |||||||||||||| ||| | || || | || ||| || |||||||||| Sbjct 61882 CGTCGAGATCGAGAAGGAATTCTTGACCGAGGCTCTTCCCTGCGGTTTGATCGGCATGAA 61941 Query 42983 CCACGACCTCATGTGCAAGT 43002 | | ||||||||| ||| Sbjct 61942 TGCCAAGCTCATGTGCCAGT 61961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944286470459920