Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016715.1_202016-07-08] 4,467 sequences; 26,210,450 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1663 170 2e-37 seq1973 125 9e-24 >seq1663 Length=15306 Score = 170 bits (188), Expect = 2e-37 Identities = 562/863 (65%), Gaps = 18/863 (2%) Strand=Plus/Plus Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 ||||| || |||| || || || | | ||| ||| | | |||||| || || || Sbjct 12290 GCGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGATGATCTCG 12349 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || |||| || || ||| || ||||| | |||||||| || || || |||| Sbjct 12350 GTGCACAGGTTCGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCTTGTTCGCG 12409 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || || |||||||||||| | || | || || || |||| | ||||| || | | Sbjct 12410 GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGAATCGCGTAC 12469 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | | ||| | || | || ||||| || ||||||| ||||| || | | Sbjct 12470 CAAAGCTTTTGCG-CGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTATTTCTCGAA 12528 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAG-AGCCCTGGTGCCTTATCTGGACAGA 116728 | ||| ||||| || || | || || | | || || || || | | || |||| Sbjct 12529 CAAGGCGCGGAACTCCTCGCC-ATAGACTTCGTGGAGGCCGGGGGCTTCGGCGGGGCAGA 12587 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 |||||| ||| | || | |||| || |||| |||||| || || || |||||||||| Sbjct 12588 AGAGAGGCCAATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAATCCAGAGCG 12647 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | |||||||||| ||| |||| |||| || | || || || || | |||| | Sbjct 12648 CAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAGGTCCAGGA 12707 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG-- 116906 | || | || || ||||||||||| || ||||| | ||||| | || | |||| Sbjct 12708 ATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCC---GGGACGCT 12764 Query 116907 ----ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGA 116962 ||| | |||| || || | ||| || ||| | || || ||||| || | | Sbjct 12765 TGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACAA 12824 Query 116963 TACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTG 117020 | || | || | ||| ||||| || ||| || ||| | | | || | || | ||| Sbjct 12825 TGCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCC--GGTCGCGCGGATGTTGTG 12882 Query 117021 GATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCC 117080 |||| || ||| ||||| || || ||| ||||| | |||||| | | || || | Sbjct 12883 GATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGTGTC 12942 Query 117081 GTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGG 117140 ||| || || || ||||| ||| |||| | | || ||||| ||| ||| | || || Sbjct 12943 GTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGCGG 13002 Query 117141 CCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACAT 117200 || || || ||||||||||| || || | |||||| | || | | |||||| Sbjct 13003 GTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACAT 13062 Query 117201 CTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260 | ||| | || |||||| |||||| | ||||| || |||| | ||| || Sbjct 13063 AAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACACG 13122 Query 117261 CATAAACATGTATTG-GGGTGTT 117282 ||| | ||||| ||| ||| ||| Sbjct 13123 CATGAGCATGTGTTGCGGGCGTT 13145 >seq1973 Length=46233 Score = 125 bits (138), Expect = 9e-24 Identities = 292/432 (68%), Gaps = 15/432 (3%) Strand=Plus/Plus Query 176546 CCCTTGGAAGCCTTGATGATTGGTGTCACCATTGAGACCACAAACCCC---AACTTGAGG 176602 ||||||| ||||||| ||| || || | | || || || ||| | |||||| Sbjct 12234 CCCTTGGTCGCCTTGACGATGGGGGTGATAAACTCGAGCAAGAAGCCCTTTAGCTTGAGC 12293 Query 176603 AGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCATCG 176662 | || || | |||| | || | |||| ||| |||||||||||||| || |||||| Sbjct 12294 AACGAAGGGAACCAGTAATCGAGGAAGTTGATGATCAGACCCTTAATGTGCGATCCATCG 12353 Query 176663 TTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAGCTCGGAAACATCTTGATAA 176722 | ||| ||| | ||| ||||||||| || || || ||| | || || ||| Sbjct 12354 TGATCTTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCGGTGTAA 12413 Query 176723 TCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTGAACTCTTGGTTTGATGT- 176781 | || || || || |||||||| |||| ||||| | ||||| ||| || | ||| Sbjct 12414 ACTTTGCCCTGCTGCAGACCCAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT--TGTC 12469 Query 176782 GAGTTGCGCCA---CTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGAGGGAACAC 176838 ||| | || | | || || || || || |||| || || | |||||| || Sbjct 12470 GAGGAGGGCTTTGCCCGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAAGGGAAAAC 12529 Query 176839 ACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGAATC 176898 ||| |||| || ||||| || |||| ||||| | || ||||| | ||| |||||||| Sbjct 12530 ACCATAGTTGTCTCGACCGACGACAGCCAGACCCGAGACGGCGAGCGCCTTGGCGGAATC 12589 Query 176899 ACCCTCCGTCACGATGAGCGTACACTTT--CCAGATTGTGCCGTCCCCGCCTTGTTCGCA 176956 || || |||| ||||||||| ||||| || | | | ||| || || ||||||||| Sbjct 12590 TCCTTCGGTCAAGATGAGCGTGCACTTGGACCCGTTCCT--CGTACCAGCGTTGTTCGCA 12647 Query 176957 TCGTCCAACTTG 176968 || || | |||| Sbjct 12648 TCTTCGAGCTTG 12659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613472943291720