Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016715.1_202016-07-08] 4,467 sequences; 26,210,450 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3410 185 9e-42 seq1888 136 4e-27 seq1246 132 5e-26 seq1704 122 9e-23 seq1535 87.8 2e-12 >seq3410 Length=201353 Score = 185 bits (204), Expect = 9e-42 Identities = 175/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||||||||| ||||| ||||| || |||||| | ||| || || || ||| ||||| Sbjct 61215 GATTTGAAAACCGTAGAAGCATCGAGCCTCGGCTGACTGGACCTCACCAGAGAATCGCTC 61156 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || |||||||||||||||||| ||||||||||||||| || |||||| ||| Sbjct 61155 GACCAAGTTCTCGTTGACGATGCCGTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGAT 61096 Query 133338 GAAATGGCGCTCGTTG---TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| | |||||||| | | | | | ||||||||| || |||||||||||||||| Sbjct 61095 GAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTTGGACAGGTC 61036 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 || ||| ||| |||||||||| || ||||| || || |||||| Sbjct 61035 CATCTCTTCGGCGGTCCAAAAAGATGCCTCAGCCTTCTTGTAC 60993 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| | ||||||||||||| || | ||||||||| | || ||||| |||||| Sbjct 61825 GAACAAGAGGCAAGCAAAGTCGGTGTGGAGGCCCTCGTCACGCGAGATGAGCTCGTTGGA 61766 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAA 132998 ||| ||||| |||||||| | ||| || || |||||||| || |||| ||||| Sbjct 61765 GAAGGTCAATCCGGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAA 61712 >seq1888 Length=70466 Score = 136 bits (150), Expect = 4e-27 Identities = 153/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 38259 AAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACG 38318 || ||||| |||||||| || ||||| |||| |||||| || | |||| || | | Sbjct 3 AAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCGGACA-CGATCGACAA 61 Query 38319 CTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTA 38377 | | |||| || |||| || || ||||| |||||| | |||||||| || ||||| | Sbjct 62 CGTCAAGACCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAACAACGTCTCATCTT 121 Query 38378 CGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGC 38437 ||| ||||| ||||| || || | ||||| ||| ||| ||||||||||| ||||| | Sbjct 122 CGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAACATCCAGAAGGAGTC 181 Query 38438 GACGCTGCATTTGGTGCTGCGT 38459 |||||| || |||||||||||| Sbjct 182 GACGCTCCACTTGGTGCTGCGT 203 Score = 123 bits (136), Expect = 2e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| || ||||| |||| |||||| | | Sbjct 216 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 275 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | | |||| || || | ||||| || || |||||| | ||||| Sbjct 276 GACA-CGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCA 334 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || || | || || ||| || ||||| Sbjct 335 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 394 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||||||| || |||||||||||| Sbjct 395 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGT 431 >seq1246 Length=48807 Score = 132 bits (146), Expect = 5e-26 Identities = 162/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || ||||||||||| ||||||||| |||| |||||| | ||| Sbjct 4068 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 4009 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 ||| || | | | | |||| || |||| ||||| || || || |||||| ||||| Sbjct 4008 ACA-CGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCAT-CCCGCCAGACCA 3951 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || ||||| ||||| || || | |||||| | ||||||||| Sbjct 3950 GCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAA 3891 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||| |||| || || ||||| || || Sbjct 3890 CATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCG 3855 >seq1704 Length=108281 Score = 122 bits (134), Expect = 9e-23 Identities = 167/228 (73%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 |||||| || || || || || |||||||| || |||||| |||| |||||| | |||| Sbjct 55613 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 55672 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GACCAA 38363 || || | | | | |||| || |||| ||||| || || || |||||| ||||| Sbjct 55673 CA-CGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCAT-CCCGCCAGACCAG 55730 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || ||||| ||||| || || | |||||| | |||||||||| Sbjct 55731 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 55790 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| |||| || || ||||| || || | |||| ||| Sbjct 55791 ATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTCCGAGGTGGC 55838 >seq1535 Length=208129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| |||||| | | || || ||| ||| | || ||||| | ||| ||||| Sbjct 28242 CAAATGACTGAACAAGAGGACGGCGAATTCGGTATGAAGACCTTCGTCGCGGGATATGAG 28301 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 |||||| ||||| | ||| ||||||||||| |||||||| |||||||| |||| ||| Sbjct 28302 CTCGTTGGAGAAAGAGAGGCCAGGCATGAGGCCTCGTTTTTTAAGCCAAAAGATGGAGGC 28361 Query 132996 GAA 132998 ||| Sbjct 28362 GAA 28364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500144871601280