Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016725.1_202016-07-08] 5,202 sequences; 26,456,369 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq424 275 6e-69 seq39 114 1e-20 seq147 107 2e-18 seq63 91.5 1e-13 seq46 86.0 6e-12 >seq424 Length=13803 Score = 275 bits (304), Expect = 6e-69 Identities = 963/1493 (65%), Gaps = 50/1493 (3%) Strand=Plus/Plus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| | || ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 9979 GAAGTGTATGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 10038 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | || |||||||||| ||| || ||||||| Sbjct 10039 ATTGGCGCGCACACGAGCGAGTTACGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 10098 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 |||||||||||||||| | ||| |||||| |||||| ||||| |||| | |||| Sbjct 10099 GACCAGTCCCACAGATTGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAGCTCGCCC 10155 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCAT- 22721 || ||||| || ||| || ||| ||| | || Sbjct 10156 TGAGAAGCCGGAGATCCAGGGTAAGTCGAGTAGTAGCCTGGGTCGCCCGGGTTAGCGATG 10215 Query 22722 ---ATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 10216 GCAAAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 10275 Query 22778 ATTTTCTTGTTCAA-TTCGGCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 |||| |||||| | || ||| | ||||| ||| ||||||| || || Sbjct 10276 ATTTGCTTGTTGAGCTTACGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCAT 10331 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 10332 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 10391 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 || |||||| | ||||| | || ||||| | | ||||||||| | || Sbjct 10392 TTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 10451 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | ||||||||| ||||| | | | || || Sbjct 10452 GACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTACACGCCG--TCCTTGATGAAGCTC 10509 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 10510 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGCGCCGAGTACTCGAT 10568 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || || || | || |||| |||||||| | ||| | ||||| | ||| | Sbjct 10569 GATCTCGGTGCACAGGTT-CGACGACTTGATCGTGCCAAGATTCTTTTGGTTCGATTTCT 10627 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | | || | || ||||||||||| | || |||| || |||||||| | || | Sbjct 10628 TGTTCGCG-GCGTCTTTGTAGAGCATAAAAGGGTTGCCAGTTTCGACCTGGGCTTCAAGA 10686 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTAC 23251 ||||| ||| | | || ||| | | | | | | ||| || | ||||| Sbjct 10687 ATCGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTAT 10746 Query 23252 TTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC 23311 || | | |||| ||| || || | || || ||| |||||||| | || Sbjct 10747 TTCTCGAACAAGGCGCGGAACTCCTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCG 10806 Query 23312 GGACACATGAGACTCCACATTGA-GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTAT 23370 || || | |||| ||| || | | | || || || ||| |||||||| || || Sbjct 10807 GGGCAGAAGAGAGGCCA-ATCGCCGGCGGCCTCGACACGCTCCATGAAAAGATCGGGAAT 10865 Query 23371 CCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAA 23430 ||| || || |||| || || || ||||| || ||||| |||||| |||||| | Sbjct 10866 CCAGAGCGCAAAGAAGAGATCACGAGCGCGAACTTCCTCCTTGCCGTGGTTCTTGCGAAG 10925 Query 23431 ATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGG 23490 |||| || || || ||||| || ||||||||||||||||| | || || || || || Sbjct 10926 GTCCAGGAATTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGG 10985 Query 23491 TCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGG 23550 | ||| ||||| || || |||||||| || || ||||||||||| || | ||||| || Sbjct 10986 ACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGG 11045 Query 23551 CACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTT 23610 || | ||||| || |||| | ||| || | || || | || || | ||| Sbjct 11046 GACAATGCCGTTCGAGTAGCCGTTTGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTT 11105 Query 23611 GTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGT 23670 ||| | | ||||| || || ||| | | || || || | |||||| || || || Sbjct 11106 GTGGATGCTCAAACCGATACCGCCGGCGGTCTTGGAGATGAGCGCGCACGTCTTAAGCGT 11165 Query 23671 GTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG 23730 |||||| ||||| || || || || || ||| ||||| |||||| || || | || Sbjct 11166 GTCGTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTG 11225 Query 23731 CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGA 23790 || | ||||| |||| ||| || ||||| |||||| |||||||| | | || Sbjct 11226 CGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGA 11285 Query 23791 CATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGAC 23850 ||| || ||||||| | | | || |||||||| | ||||| || |||| |||||| Sbjct 11286 CATAAGGTTGTACGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGAC 11345 Query 23851 GCGCATCATCATGTATTGAGGTC--TC-TCGACCGTGACGCCGTTAATTTTGAACAGATA 23907 ||||| | ||||| ||| || | || ||||| | ||||| || | || || Sbjct 11346 ACGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTT---GCCGTCGATGCGAAGCAAGTA 11402 Query 23908 TGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGT 23960 || |||| | |||||| || ||||| |||| ||| || || || |||| Sbjct 11403 GGAGCGTTCGAGCGTTTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 11455 >seq39 Length=108268 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| || || |||||||| || ||||| ||||||||| |||| || || | Sbjct 53094 AATCAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 53035 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | ||||| | Sbjct 53034 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAG 52976 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || || || ||||| ||| | || || || || ||| | Sbjct 52975 ACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACT 52916 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 52915 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTCCT 52879 >seq147 Length=48581 Score = 107 bits (118), Expect = 2e-18 Identities = 169/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 44514 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 44573 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 44574 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 44632 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || || || ||| || ||| Sbjct 44633 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 44692 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 44693 ATCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 44751 >seq63 Length=84378 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || |||| Sbjct 76869 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 76810 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 76809 GACACGATCGACAACGTCAAGACCAAGATTCA-GGACAAGGAAGGCATTCCCCCAGACCA 76751 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTT---GGAAGACTCTATGACTATGAGCGATTA 31368 |||||| | || ||||| ||||| ||| | ||| | | || | || | | ||||| Sbjct 76750 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACG-CT-CGCG-GATTA 76694 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || ||||| || || |||| || Sbjct 76693 CAACATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 76658 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 77097 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 77038 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||| ||||| ||| | || || ||||| Sbjct 77037 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGATAAGGAGGGCATTCCCCCAGACCA 76979 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || ||||| || ||||||||||| ||| | || || || | |||||| || Sbjct 76978 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 76919 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || |||| || Sbjct 76918 CATCCAGAAGGAGTCGACGCTCCACTTGGTGCT 76886 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || ||||| |||||||| |||| || || | || Sbjct 77325 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 77266 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 77265 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATTCCCCCAGACCA 77207 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| | || ||||||||||| ||| | || || Sbjct 77206 GCAGCGATTGATCTTCGCTGGCAAGCAGCTCGAGGA 77171 >seq46 Length=101831 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 349 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 290 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||| ||| | || || |||||| Sbjct 289 GACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTCCAGACCAG 230 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||| | || || |||||||| ||| | || || Sbjct 229 CAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGA 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445737414039840