Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016725.1_202016-07-08] 5,202 sequences; 26,456,369 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq39 122 7e-23 seq147 116 3e-21 seq46 111 1e-19 seq63 109 5e-19 >seq39 Length=108268 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 |||||| ||||| || ||| | || || || ||| |||| || || || || | |||| Sbjct 53088 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 53029 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | ||| | |||| || || ||||||||||| || || || || || || || Sbjct 53028 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGCA 52969 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 |||||| || ||||||||||| ||| | |||||| ||||||| | |||| |||||||| Sbjct 52968 ACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 52909 Query 22401 TCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || ||| | || || || Sbjct 52908 CCAAAAGGAGTCGACCCTCCACTTGGT 52882 >seq147 Length=48581 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| ||||| || || | || || || || |||| || || || || | ||| Sbjct 44514 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 44573 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | ||| | |||| || || ||||||||||| || || || || || || | Sbjct 44574 ACACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 44633 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 ||||||| || ||||||||||| ||| | |||||| ||||||| | |||| ||||||| Sbjct 44634 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 44693 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | ||||| || || ||| | || || || | || |||| || ||| Sbjct 44694 TCCAAAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTGCGTGGTGGT 44740 >seq46 Length=101831 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 |||| |||||||||| || || || || | ||||| || ||| |||| || || || | Sbjct 357 TTGTTCAGATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCG 298 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | || | || || | ||| | |||| || || |||||||||||||| ||||| | Sbjct 297 AGTCCTCGGACACGATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCTC 238 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || || || || | || ||||| ||||| ||| | |||||| |||||| || ||| Sbjct 237 CAGACCAGCAGCGATTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCG 178 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || || || || || || | || || ||| | || | || || ||| Sbjct 177 ATTACAATATCCAGAAGGAGTCGACGCTGCACTTGGTTCTCCGTCTCCGAGGTGGT 122 >seq63 Length=84378 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || || || || | Sbjct 77097 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 77038 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || || |||||||| ||||| || || ||| Sbjct 77037 GACACGATCGACAACGTCAAGACCAAGATCCAGGATAAGGAGGGCATTCCCCCAGACCAA 76978 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| ||| | |||||| |||||| || ||||||||||| Sbjct 76977 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 76918 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || |||| | || || ||| Sbjct 76917 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGGT 76870 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || ||| |||| || || || || | | Sbjct 76869 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 76810 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| |||||||| || ||||| || || || Sbjct 76809 GACACGATCGACAACGTCAAGACCAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 76750 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | |||||| ||| || || | ||||||||| Sbjct 76749 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAAC 76690 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || || || |||| | || || ||| Sbjct 76689 ATCCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGGT 76642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419701389507130