Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016725.1_202016-07-08] 5,202 sequences; 26,456,369 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq39 152 1e-31 seq147 147 5e-30 seq63 132 1e-25 seq46 102 2e-16 seq468 87.8 4e-12 >seq39 Length=108268 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| |||||||||||||||| ||||||||| ||||| || | ||||| Sbjct 52879 AGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCC 52938 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||||||||| |||||||| || || ||||| || Sbjct 52939 TCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCT 52998 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | ||||||||| Sbjct 52999 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTC 53058 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| ||||| || ||||| ||||| Sbjct 53059 TTGCCCGTAAGAGTCTTGACAAAGATTTG 53087 >seq147 Length=48581 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| |||||||||||||||| ||||||||| ||||| || | ||||| Sbjct 44724 AGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCC 44665 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| ||||||||||| |||||||| || || ||||| || Sbjct 44664 TCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCT 44605 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 44604 TGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTC 44545 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || ||||| ||||| Sbjct 44544 TTGCCCGTGAGGGTCTTGACAAAGATTTG 44516 >seq63 Length=84378 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| ||||||||||| |||| |||||| || || | || Sbjct 76649 CGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCCGCGAGCGTA 76708 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || |||||||| | ||||||||||| || ||| ||| Sbjct 76709 CGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCT 76768 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| ||| |||| ||||| | | || || || | | Sbjct 76769 TCCTTGTCCTGAATCTTGGTCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGC 76828 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || ||||| || || Sbjct 76829 GTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTG 76866 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| ||||||||||| |||| |||||| || || | || Sbjct 76877 CGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTG 76936 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || |||||||||||||| || ||||| || ||| || Sbjct 76937 CGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCC 76996 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || || | | Sbjct 76997 TCCTTATCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGC 77056 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || ||||| || || Sbjct 77057 GTGATCGTCTTGCCCGTCAGCGTCTTGACAAAGATCTG 77094 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| ||||||||||| |||| ||||| || || | || Sbjct 77105 CGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTG 77164 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || |||||||| | ||||||||||| || ||| ||| Sbjct 77165 CGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGGAATGCCT 77224 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| |||| ||||| | | || || || | | Sbjct 77225 TCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGC 77284 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || ||||| || || Sbjct 77285 GTGATCGTCTTGCCCGTAAGCGTCTTGACAAAGATCTG 77322 >seq46 Length=101831 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| |||| ||||| || || | || | ||||| Sbjct 138 AGAACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCC 197 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || ||||| | ||||||||||| ||| ||| || || || Sbjct 198 TCGAGCTGCTTGCCAGCAAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCT 257 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | |||||||||| Sbjct 258 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 317 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || ||||| Sbjct 318 TTGCCGGTCAGGGTCTTGACGAAGATTTG 346 >seq468 Length=11859 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| |||| ||||| || || | || | ||||| Sbjct 160 AGCACCAAGTGCAGCGTCGACTCCTTCTGGATATTGTAATCGGCGAGCGTGCGGCCATCC 101 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | ||||||||||| ||| ||| || || ||| Sbjct 100 TCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 41 Query 199538 TGAATCTT 199545 |||||||| Sbjct 40 TGAATCTT 33 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178843024138534