Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016725.1_202016-07-08] 5,202 sequences; 26,456,369 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq19 387 2e-102 seq12 170 2e-37 seq104 161 1e-34 seq246 105 8e-18 >seq19 Length=145907 Score = 387 bits (428), Expect = 2e-102 Identities = 580/824 (70%), Gaps = 0/824 (0%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| || | ||||||||| ||||| | || ||||| || || |||||||||||||| Sbjct 23947 TCACCGGTGAGGATGGCGGCCTGGACAGCGGCACCGTAGGCAACGGCCTCATCGGGGTTG 24006 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || | || || ||||| || || ||||| | | || || | ||||| Sbjct 24007 ATGGACTTGTTAGGCTCCTTGCCGTTGAAGTAGTCCGAGACGAGTTTCTGGACCTTCGGA 24066 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || ||||| || | ||||| || | || | || |||||||| ||| Sbjct 24067 ATACGAGTGGAGCCACCAACGAGGACGATCTCGTGGACGGAAGCCTTGTCGATCTTGGAG 24126 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || ||||| || ||||| |||||||| |||||||||||| |||| ||| Sbjct 24127 TCGCGAAGGACCTTCTCGACGGGTTCCATGGTGCCACGGAACAAGTCTTGGCACAACTCC 24186 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || ||||| || ||||| || ||||| || | || ||| | | ||| || || Sbjct 24187 TCGAAGCGAGCACGAGTGATGGAGGTGTAGAAGTCGATACCCTCGAAGAGCGAGTCGATC 24246 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || ||||| || || || | |||||| | |||||||| || ||||| || || || || Sbjct 24247 TCGATGGTAGTCTGCGCGGCCGAAGAGAGGGTTCGCTTGGCACGCTCGCAGGCAGTGCGG 24306 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | |||||| || ||||| | ||| || | ||| ||||| | || || || ||||| Sbjct 24307 AGACGACGGAGAGCACGGGCGTTGGACGAGAGATCCTTCTTGTTCTTGCGCTTGAACTCG 24366 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | |||||| | ||||| ||||| || ||||| |||||||| || || || Sbjct 24367 GCGACGAAGTGAGTGACGAGTCGGTTGTCGAAGTCCTCACCTCCCAAGTGGGTGTCACCG 24426 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 ||||| || ||||| || |||||||| | |||||| | || | || ||||| ||||| Sbjct 24427 GCGGTGGCCTTGACCTCGAAGATACCCTCCTCAATGGTCAAAAGGGAGACATCGAACGTT 24486 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 || || || || ||||| ||||| |||||| | ||| || | | ||||| ||||| ||| Sbjct 24487 CCTCCTCCGAGATCAAAGATGAGGACGTTCTTCTCGCCGACGGTCTTCTTGTCGAGGCCG 24546 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 || ||||| || || || || || || ||||||||||| || ||| ||||| | || Sbjct 24547 TAAGCGATGGCGGCGGCGGTGGGCTCGTTAATAATACGGAGGACGTTGAGGCCCGAGATG 24606 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | ||||| || || |||||||| ||||| ||||| |||||||| ||||| || ||| Sbjct 24607 ACACCGGCATCCTTGGTGGCTTGTCGCTGCGAGTCGTTGAAGTAGGCGGGGACAGTGACG 24666 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| | ||| || | ||||| || | || ||| | || ||||| || || Sbjct 24667 ACGGCGTTGGAGACGGTCGTGCCGAGGTAGGCCTCAGCGGTCTCCTTCATCTTCAGCAGG 24726 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACC 7833 | ||| ||||| || || || | | ||||| || || || || Sbjct 24727 ATCATGGATGAGATTTCCTCGGGGGTGAACTGCTTGGTCTCGCC 24770 >seq12 Length=154233 Score = 170 bits (188), Expect = 2e-37 Identities = 524/807 (65%), Gaps = 15/807 (2%) Strand=Plus/Minus Query 7012 ACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAAT 7071 ||| || |||| |||||| || || | || ||||| || || |||||||||||||| || Sbjct 69781 ACCGGTCAAGACGGCGGCCTGAACGGCGGCACCGTAGGCAACGGCCTCATCGGGGTTGAT 69722 Query 7072 CGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGAT 7131 || || |||| | | || || | || || | | || || || ||||| Sbjct 69721 CGACTTGTTCAACTGTCGGCCACCGAAGAACTCGGAAACGAGCGACTGGATCTTGGGGAT 69662 Query 7132 TCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC 7191 || ||||| |||||||| | ||||| || | || || | |||| ||| | ||| Sbjct 69661 ACGGGTCGAGCCACCGACGAGGACGATGTCGTCGACCTTGGTGCGGTCGACCTTGGCGTC 69602 Query 7192 TCGAAGTGTTTTTTCGACAGGTTCCATACATTTA-CGGAACAAGTCCATACACAGTTCCT 7250 | || || ||||| || || | | | | ||||| | | | |||| Sbjct 69601 TTTGAGGACCTTCTCGACGGGGTCGAG-CGTGGAGCGGAAGGTGGCGGCGTTGATCTCCT 69543 Query 7251 CAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTT 7310 | ||||| ||||||| || || | |||| || || | | | | ||| || | | Sbjct 69542 CGAAACGAGCACGGGAGATCGAGGCGGAGAAGTCGGTACCTTGGAAGAGCGAGTCGACCT 69483 Query 7311 CAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTA 7370 | | ||| || || | || || | || ||||| || ||||| ||||| | ||| | Sbjct 69482 CGACGGTCGTCTGCGTAACGGACGAAAGGGTGCGCTTGGCACGCTCGCACGCGGATCGGA 69423 Query 7371 AACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTT 7430 |||||| ||||||||||||| |||| || || ||| | || | | |||||| | Sbjct 69422 GACGACGGAGGGCACGCGGGTCCTCGGAGATGTCGAGCTTGTTCTTCCTCTCAAACTCCT 69363 Query 7431 CAGAGAAGTGT--CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCC 7488 |||||| | || | | | | || || || |||||||||||||| || || || Sbjct 69362 TCTTGAAGTGCTCCAAAAGGGCGTTG--TCAAAGTCCTCACCACCCAAGTGGGTGTCACC 69305 Query 7489 CGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGT 7548 ||||| || ||||| | |||| ||| || ||| | || | ||| ||||| || || Sbjct 69304 AGCGGTGGCCTTGACGGCGAAGACACCACCCGAGATGGTCAAGAGCGAGACATCGAAAGT 69245 Query 7549 ACCACCACCCAGGTCAAAAATGAGTACG---------TTCGTATCGTCGTCTTTGTTCTT 7599 || || || || || || ||||| ||| ||| || | || || || Sbjct 69244 TCCTCCTCCAAGATCGAAGATGAGAACGAGCTTCTCCTTCTTAGACTTCTCGGTGGCCTC 69185 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAG 7659 | | |||||||| ||||| || || || || || || || || ||||| || || || Sbjct 69184 ACCCAGACCGTAGGCGATGGCAGCGGCGGTGGGCTCGTTGATGATACGGAGCACGTCCAA 69125 Query 7660 GCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGG 7719 || || || ||| | || || || |||| | || ||||| ||||| ||||| || || Sbjct 69124 ACCGGCGATCGTTCCGGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAAGCGGG 69065 Query 7720 GACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 ||| || ||||| || | | |||| | ||| ||||| | | || ||| | || || | Sbjct 69064 GACGGTGACGACGGCCTTCTTGACCTCCTTGCCGAGTTTGGTCTCGGCGGTCTCCTTGAG 69005 Query 7780 TTTGGTAAGAACCATCGATGAAATCTC 7806 |||| ||| ||||| || || ||||| Sbjct 69004 CTTGGAAAGGACCATGGACGAGATCTC 68978 Score = 104 bits (114), Expect = 3e-17 Identities = 115/153 (75%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGT 8052 ||| |||| ||| || || ||||| || | | | || || ||||| || || ||||| Sbjct 68724 CTTGGCCGAGTCACCAATGAGACGCTCGGTCT---CGGTGAAGGCGACATAAGAAGGGGT 68668 Query 8053 CGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGAC 8112 || || || || |||||||| || || || || || ||||||||||||||||| ||||| Sbjct 68667 GGTGCGGTTACCCTGGTCGTTGGCGATGATCTCGACTCGGTCGTTTTGCCAGACACCGAC 68608 Query 8113 GCACGAATACGTTGTTCCTAAATCAATACCGAT 8145 ||| || || || ||||| | ||| ||||| || Sbjct 68607 GCAGGAGTAGGTGGTTCCGAGATCGATACCTAT 68575 >seq104 Length=63599 Score = 161 bits (178), Expect = 1e-34 Identities = 248/353 (70%), Gaps = 3/353 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| || ||| ||||||| ||| Sbjct 21663 TCGAAGTCCTCACCACCCAAGTGGGTGTCACCGGCGGTGGCCAAGACCTCAAAGACACCG 21722 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||| || | | ||| ||||| ||||| || || || || || | | || | | Sbjct 21723 TCTTCGATCGAGAGGAGCGAGACATCGAACGTTCCTCCTCCGAGATCGTAGACGATGATG 21782 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| | | | |||| ||||||||||| ||||| || || || || || || Sbjct 21783 TTGCGCTCGCCACC---GGTCTTGTCGAGACCGTAGGCGATCGCGGCGGCAGTGGGCTCG 21839 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | || || ||| |||||| || || || || | || || || |||||||||||| Sbjct 21840 TTGACAACTCGGAGAACGTTCAGACCGGCGATCGTGCCAGCGTCCTTGGTCGCTTGTCGT 21899 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||||||||| || ||||| |||| ||||| ||||| || | Sbjct 21900 TGAGCGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGGGTGACCTTCTTGCCCAAG 21959 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | || ||| | || ||||| ||| | || ||| | || ||||| || Sbjct 21960 TAGGCCTCGGCGGTCTCCTTCATCTTGCCCAAAATCATGGCCGAGATCTCCTC 22012 >seq246 Length=28400 Score = 105 bits (116), Expect = 8e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 |||||||||||||||| || || || || || || ||||| | ||| || || || Sbjct 13240 TCGAGACCGTACGCGAGGGCAGCGGCGGTGGGCTCGTTAATGACACGGAGCACGTCAAGA 13299 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 || || || || | || || || ||||| ||||| ||||| ||||| |||||||| ||| Sbjct 13300 CCCGCGATCGTACCGGCGTCCTTGGTCGCCTGTCGCTGCGAGTCGTTGAAGTAGGCGGGG 13359 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATT 7780 || || ||||| |||| | |||| ||| ||||| || || ||| | || ||||| Sbjct 13360 ACAGTGACGACGGCGTGCTTGACCGGCTTTCCGAGGTAGCCCTCGGCGGTCTCCTTCATC 13419 Query 7781 TTG 7783 ||| Sbjct 13420 TTG 13422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635091500489680