Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016725.1_202016-07-08] 5,202 sequences; 26,456,369 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq196 147 3e-30 seq424 138 1e-27 seq154 122 1e-22 seq177 105 8e-18 >seq196 Length=36967 Score = 147 bits (162), Expect = 3e-30 Identities = 283/415 (68%), Gaps = 2/415 (0%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||||||||| ||||| ||| ||| || || ||| || || || ||| | Sbjct 26141 CGCTTCTACCAAGCCTCGACTTCCGAGTTGTACGGCAAGGTCGTCGAGACCCCTCAATCC 26082 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| ||||||||| | ||| | || | ||| Sbjct 26081 GAGACGACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTACTGG 26022 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||| | ||||| ||| |||||| ||| ||| | |||||| Sbjct 26021 ATCGTCAAGAACTACCGCGAGGCGTACGGCATGTACGCGTGCAACGGTATCTTGTTCAAC 25962 Query 7412 CATGAATCACCGAGACGAGGT-GCAGACTTTGTCACAAAGAAGATTACCGAGGGTATCAA 7470 || || || ||| | || ||| ||| ||||||||| | ||||||| || | | || Sbjct 25961 CACGAGTCCCCGCGTCGTGGTCGCA-CCTTTGTCACGAGGAAGATTTCCCGAGCTGTCGC 25903 Query 7471 ACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGCGAGAGA 7530 | ||| | ||| || |||| | | | | | || || || | || | | || Sbjct 25902 CGAGATCTCGCTCGGTCAACAGGACTGCCTCTACCTCGGCAATATGGAGGCCAAGCGTGA 25843 Query 7531 TTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGGAAGC 7590 |||||| ||||| ||||| || || | ||||||| ||| | || || || Sbjct 25842 TTGGGGACACGCCGCCGACTACGTCGAGGGTATGTGGAGGATGATGCAGGAACCCACCGC 25783 Query 7591 CGACGAATATGTAGTAGCAACGGGTGAGACCCATACAGTGAGGCGGTTCATTGAG 7645 |||||| | ||| | || |||||||||||||| | || | | |||||| ||| Sbjct 25782 CGACGACTTTGTCCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCATCGAG 25728 >seq424 Length=13803 Score = 138 bits (152), Expect = 1e-27 Identities = 520/807 (64%), Gaps = 19/807 (2%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| || ||||| ||||||| || ||| |||| || || || | |||||||| || Sbjct 11367 CCCGCAACACATGCTCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATTGAGCGCGT 11308 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 |||| || | ||| || |||||| | | || | ||||| | || || ||||| Sbjct 11307 CTTGCAGTCGTACAACCTTATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTT 11248 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || || || | || || ||||| || | | ||||| || Sbjct 11247 CAACGCCGGAACGCCTCACCCGCAGCTTTCGTCCTGTTTCCTGGTCACGATGAAGGATGA 11188 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 || || | || || || | || |||| | ||| |||| ||||| ||| || || Sbjct 11187 TTCGATTGAAGGCATTTACGACACGCTTAAGACGTGCGCGCTCATCTCCAAGACCGCCGG 11128 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTAT-TCGGGGG-ACA 104518 ||||| || || |||||| | | | || | ||| || ||| || ||| Sbjct 11127 CGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGG--CTCCTACATCGCCGGCACA 11070 Query 104519 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 104578 || || | || | || ||| | || ||||| || || | ||| ||| |||||||| Sbjct 11069 AACGGCTACTCGAACGGCATTGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTAC 11010 Query 104579 GTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGG 104632 || | |||| ||| ||||| ||| | |||| |||| || ||||| ||| Sbjct 11009 GTCGACCAAGGTGGCAACAAGCGTCCC---GGAGCCTTCGCGATCTACCTCGAGCCGTGG 10953 Query 104633 CACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGC 104690 ||||| || || | || ||||| || | || ||||| || | ||||| | ||| Sbjct 10952 CACGCCGACGTCTTCGAATTCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAAGTTCGC 10893 Query 104691 GGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGG 104750 | | || |||||||||| || ||||||||||| ||||| |||||| || | || |||| Sbjct 10892 GCT--CGTGATCTCTTCTTTGCGCTCTGGATTCCCGATCTTTTCATGGAGCGTGTCGAGG 10835 Query 104751 AGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGG 104810 ||| ||||| ||||||| || || | | | || || || ||| ||| | | | Sbjct 10834 CCGCCGGCGATTGGCCTCTCTTCTGCCCCGCCGAAGCCCCCGGCCTCCACGAAGTCTATG 10775 Query 104811 GTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGG 104870 | |||||||| ||| | | | || ||||| | || || || || | ||| Sbjct 10774 GCGAGGAGTTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAAACGA 10715 Query 104871 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 104929 | || || || | | | ||| | || ||||| | | || ||| ||||| | || Sbjct 10714 TCCCCGC-GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACTGGCAACCCT 10656 Query 104930 TACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 104989 | ||||| |||||||||||| ||| | || || ||||||||| | || |||| Sbjct 10655 TTTATGCTCTACAAAGACGCCGCGAACAAGAAATCGAACCAAAAGAATCTTGGCACGATC 10596 Query 104990 AAGAGTTCCAATCTCTGTACAGAAATC 105016 ||| || || || || || || ||| Sbjct 10595 AAGTCGTCGAACCTGTGCACCGAGATC 10569 >seq154 Length=46214 Score = 122 bits (134), Expect = 1e-22 Identities = 234/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 169160 TTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAGA 169219 |||| || |||||||| ||||| || || |||| ||| ||| | |||||||||||| Sbjct 33896 TTGATGATCAGACCCTTAATGTGCGATCCATCGTGATCTTGATCGGCCATGATCATGAGC 33837 Query 169220 CGACCATACCGAAGCTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAGATC 169279 || || || ||| | || || || | || ||||| || |||||||||||| Sbjct 33836 TTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCTGCAGACCCAAGATC 33777 Query 169280 TTCTTGAGATCG-TTGAACTCTTGG-TTTGATG-TGAGCTGTGTGACAGAGGCATCGCGA 169336 | ||| ||||| ||||| ||| || ||| | ||| | || | | || || || Sbjct 33776 TGCTT--GATCGCTTGAA-TCTCGGCATTGTCGAGGAGGGCTTTGCCCGCCGCTTCACGC 33720 Query 169337 ACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCACGACCAACGACGGAG 169396 || || |||| || || | |||||| ||||| |||| || ||||| ||||| | Sbjct 33719 ACGTTGAGCAACTTTCCTCGCAAAGGGAAAACACCATAGTTGTCTCGACCGACGACAGCC 33660 Query 169397 AGACCCGCGACTGCGAGAGTCTTCGCCGAGTCACCCTCGGTGACGATGAGCGTACATTT- 169455 ||||||| ||| ||||| | ||| || || || || ||||| | ||||||||| || || Sbjct 33659 AGACCCGAGACGGCGAGCGCCTTGGCGGAATCTCCTTCGGTCAAGATGAGCGTGCACTTG 33600 Query 169456 -TCCAGATTGTGCCGTACCCGCCTTGTTCGCATCATC 169491 || | | | |||||| || ||||||||||| || Sbjct 33599 GACCCGTTCCT--CGTACCAGCGTTGTTCGCATCTTC 33565 >seq177 Length=41378 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 7232 CGCGTATACCAAGCCTCAACTTCGGAGATGTTTGGTAAAGTCCGAGAAACTCCACAAAAC 7291 ||| | ||||| ||||| || |||||| ||| || || || || || || || | Sbjct 35550 CGCTTCTACCAGGCCTCGACCTCGGAGTTGTACGGCAAGGTTGTCGAGACCCCTCAGTCC 35491 Query 7292 GAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCGGCACATTGG 7351 ||| ||| ||||||||||| || ||| |||||||||| | ||| | || ||| Sbjct 35490 GAGACGACCCCCTTCTACCCTCGTTCGCCCTACGGAGTCGCCAAGTTGTACGCCTTCTGG 35431 Query 7352 CTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTCAAC 7411 ||||||| || ||||||||||| |||| ||| |||||| ||| |||||||||||| Sbjct 35430 ATCGTCAAGAACTACCGCGAGTCGTACGACATGTACGCGTGCAACGGTATCCTCTTCAAC 35371 Query 7412 CATGAATCACC 7422 || || || || Sbjct 35370 CACGAGTCCCC 35360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583222873466480