Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20lychnidis- dioicae_20[genbank_20GCA_5F900016725.1_202016-07-08] 5,202 sequences; 26,456,369 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq147 107 1e-18 seq39 98.7 7e-16 seq63 93.3 3e-14 >seq147 Length=48581 Score = 107 bits (118), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||| | |||| || || || || ||||||||||| || || ||||| ||||| || || | Sbjct 44508 TTACAGTGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGT 44567 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | ||||| | || || | || || || | | ||||| ||||| | |||||| Sbjct 44568 CGTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCA 44626 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 || || || ||| | || ||||||||||| || || || || | ||||| || | ||| Sbjct 44627 GACCAGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGAC 44686 Query 23785 TACAACATACAAAAAGAGTCCAC 23807 |||||||| ||||| ||||| || Sbjct 44687 TACAACATCCAAAAGGAGTCGAC 44709 >seq39 Length=108268 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 ||| || || || || || || ||||| || |||||||| ||||| || || || | || Sbjct 53088 GCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 53029 Query 23673 CACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAAC 23731 ||| | || || | || || || | | ||||| ||||| | |||||||| || | Sbjct 53028 CACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAGC 52970 Query 23732 AGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACA 23791 | ||| | || ||||||||||| || || || || | ||||| || | ||| ||||||| Sbjct 52969 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 52910 Query 23792 TACAAAAAGAGTCCAC 23807 | ||||| ||||| || Sbjct 52909 TCCAAAAGGAGTCGAC 52894 >seq63 Length=84378 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| || |||||||| ||||| || || || || Sbjct 76869 ATGCAGATCTTTGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 76810 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | || ||||| ||||| | || ||||| || Sbjct 76809 GACACGATCGACAACGTCAAGACCAAGA-TTCAGGACAAGGAAGGCATTCCCCCAGACCA 76751 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || || ||||| || || || || | || || | | |||||||| Sbjct 76750 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCGGATTACAA 76691 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 76690 CATCCAGAAGGAGTCGAC 76673 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| || |||||||| ||||| || || ||| || Sbjct 77097 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 77038 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || || | || || || | | || || || || | || ||||| || Sbjct 77037 GACACGATCGACAACGTCAAGACCAAGA-TCCAGGATAAGGAGGGCATTCCCCCAGACCA 76979 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| ||| | || || || ||||| || || || || | ||||| | | ||||||||| Sbjct 76978 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAA 76919 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 76918 CATCCAGAAGGAGTCGAC 76901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337988170402616