Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12- 23] 72 sequences; 28,653,577 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq45 185 9e-42 seq36 145 8e-30 seq20 145 8e-30 seq55 140 3e-28 >seq45 Length=1665130 Score = 185 bits (204), Expect = 9e-42 Identities = 175/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Minus Query 116647 GTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACAC 116706 |||||| ||||||||||| || || ||||||| ||| ||| ||||| |||||||||||| Sbjct 331838 GTACAAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACTTGTCCAAGGACAT 331779 Query 116707 GAGCGACTGGGAGCGCTTGAACGA---CAACGAGCGCCATTTCATCAAGCACGTGCTGGC 116763 | ||||||||| | | | | | |||||||| | |||||| |||||| || || Sbjct 331778 GCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCTCGCACGTCCTCGC 331719 Query 116764 CTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGA 116823 ||||||||||||| ||||||||| ||||||||||| |||||||||| ||| || || Sbjct 331718 CTTTTTCGCCGCCTCCGACGGCATTGTCAACGAGAACTTGGTCGAGCGATTCTCTGGTGA 331659 Query 116824 GGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 ||| ||| |||||||| || ||||||||||| || || ||| Sbjct 331658 GGTCCAGTCCGCCGAGGCTCGATGCTTCTACGGTTTCCAAATC 331616 >seq36 Length=1841281 Score = 145 bits (160), Expect = 8e-30 Identities = 170/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| ||||| || || ||||||||||| ||||||||| |||| ||||| | ||| Sbjct 1559913 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1559854 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | |||| ||||| || || | ||||| || ||||||||| | |||||| Sbjct 1559853 ACACGATCGACAACG-TCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 1559795 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| || ||||| ||||| || || | ||||| ||| || |||||| Sbjct 1559794 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 1559735 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| |||||| | ||||| || | ||| | ||| || | || || Sbjct 1559734 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGG 1559688 Score = 105 bits (116), Expect = 7e-18 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 117086 TTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAAC 117145 |||||| |||| ||||||||||| ||||| ||||||||||||||||| |||| |||| Sbjct 398458 TTCGCCTCCATCTTTTGGCTCAAAAAACGAGGCCTCATGCCCGGCCTCTGTTTCTCCAAC 398399 Query 117146 GAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCAT 117205 |||||||| ||| | ||||| ||||| ||| ||| || ||| | |||||| ||| Sbjct 398398 GAGCTCATATCCCGCGACGAAGGTCTTCATACCGAATTCGCCGTCCTCTTGTTCAGTCAT 398339 Query 117206 TTG 117208 ||| Sbjct 398338 TTG 398336 >seq20 Length=1456699 Score = 145 bits (160), Expect = 8e-30 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || ||||| || ||||| |||| || || || | Sbjct 547010 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACGATCACGCTCGAGGTTGAGTCCTCG 547069 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| |||||| || |||| ||||| |||||||| ||| | ||||| Sbjct 547070 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 547128 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||||||||| ||||| || || | || || ||| ||||||||| Sbjct 547129 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAA 547188 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | |||||||| Sbjct 547189 CATCCAGAAGGAGTCGACGCTGCA 547212 Score = 123 bits (136), Expect = 3e-23 Identities = 159/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || ||||| || ||||| | || || || || | Sbjct 546782 ATGCAAATCTTTGTCAAGACCTTAACCGGCAAGACGATCACGCTTGAGGTTGAGTCCTCG 546841 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| || || |||||||| ||| | ||||| Sbjct 546842 GACACGATCGACAACG-TAAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 546900 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| ||||||| ||||||||| ||||| || || | || || ||| ||| ||||| Sbjct 546901 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGATTACAA 546960 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||| | |||||||| | ||| | ||| Sbjct 546961 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGC 546997 >seq55 Length=539833 Score = 140 bits (154), Expect = 3e-28 Identities = 168/226 (74%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 40681 CTCCGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 40740 || |||| | |||||| ||||| || || || |||||||| || |||||| |||| ||| Sbjct 107296 CTGCGAATCAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTC 107355 Query 40741 GAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCC 40799 || | |||||| | | |||| ||||| || || | ||||| || |||||||| Sbjct 107356 GAGTCGTCCGACACGATCGACAACG-TCAAGACCAAGATCCAAGACAAGGAAGGCATCCC 107414 Query 40800 CGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 40859 | | ||||||||||| ||||||| ||| ||||| ||||| || || | |||||| | Sbjct 107415 CCCAGACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGC 107474 Query 40860 CGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||||| |||||| | || || || | ||| | ||| Sbjct 107475 CGACTACAACATCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCGC 107520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218736302720