Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12- 23] 72 sequences; 28,653,577 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq41 300 1e-76 seq55 118 9e-22 seq36 113 4e-20 seq20 98.7 9e-16 >seq41 Length=447122 Score = 300 bits (332), Expect = 1e-76 Identities = 914/1402 (65%), Gaps = 46/1402 (3%) Strand=Plus/Plus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| |||| ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 422843 GAAGTGTACGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 422902 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || || || | | |||||||| | || |||||||||| ||| || ||||||| Sbjct 422903 ATGGGAGCGCAGACGAGCGAGTTGCGCAGACCGTGCTTTGCAATCTTCTCCTTGAGCTCG 422962 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 |||||||||||||||||| ||| |||||| |||||| ||||| |||||| |||| Sbjct 422963 GACCAGTCCCACAGATCGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAACTCGCCC 423019 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCAT- 22721 || ||||| || ||| || ||| ||| |||| Sbjct 423020 TGAGAAGCCGGAGATCCGGGGTAAGTCGAGTAGTAGCCGGGGTCGCCCGGGTTAGCCATG 423079 Query 22722 ---ATATCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 | ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 423080 GCAAAGTCGCGCGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 423139 Query 22778 ATTTTCTTGTTCAATTCG-GCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 || | |||||| | | | ||| | || || ||| ||||||| || | || Sbjct 423140 ATCTGCTTGTTGAGCTTGCGCGCCTCGGGTGAA----TCGAACGGCATCGCCAACGCCAT 423195 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | || || Sbjct 423196 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAGTTGGAGTT 423255 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 | |||||| | ||||| | || ||||| | | ||||||||| | || Sbjct 423256 CTGCGCCTCGATGACGGGATAGTAGTTGACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 423315 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | ||||||||| ||||| || | | || || Sbjct 423316 GACCTTGACGACCTCGTGCAACTTCTTAAAGTCGTACACGCCG--TTCTTGATGAAGCTC 423373 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| ||| || | || |||||| | Sbjct 423374 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCATCGGGCGCCGAGTACTCGAT 423432 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || | || | || |||| |||||||| | || | ||||| | ||||| Sbjct 423433 GATCTCGGTGCACAAGTT-CGACGACTTGATCGTGCCAAGGTTCTTTTGGTTCGATTTTT 423491 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | |||| | ||||||||||||||| |||| |||| || |||||||| | || | Sbjct 423492 TGTTTGCG-GCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTCGACCTGGGCTTCAAGA 423550 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG-CACGTACCTGCCTTCTTCCTCGTA 23250 ||||| ||| | | || ||| | | |||| | | | ||| || | ||||| Sbjct 423551 ATCGCGTACCAAAGCTTTTGCGCGGGGAT-CGTCTTCTTGGCGCGGCCCTCCTTTTCGTA 423609 Query 23251 CTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCAT 23310 || | | |||| ||| || || | || || ||| |||||||| | || || Sbjct 423610 TTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTT-CAG 423668 Query 23311 CGGA-CACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTA 23369 ||| || | ||| |||| | | || || || |||||| ||||| || | Sbjct 423669 CGGGGCAGAAGAGGGGCCACTCGCTGGCGGCCTCGACACGCTCCATAAACAGATCGGGAA 423728 Query 23370 TCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCA 23429 |||| || || |||| || || || ||||| |||||||| |||||| |||||| | Sbjct 423729 TCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGAA 423788 Query 23430 AATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCG 23489 |||| || || || ||||| || ||||| ||||||||||| | || || || || | Sbjct 423789 GGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGATCGCGAAGGCTCCGG 423848 Query 23490 GTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCG 23549 | | ||| ||||| || || |||||||| || || ||||||||||| || | ||||| | Sbjct 423849 GACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGG 423908 Query 23550 GCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGT 23609 | |||| ||||| || |||| ||| || | || || | || || | || Sbjct 423909 GGACGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGT 423968 Query 23610 TGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAG 23669 |||| | | ||||| || || ||| | | || || || | |||||| || || | Sbjct 423969 TGTGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCG 424028 Query 23670 TGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTT 23729 ||||||||||||| ||||| ||| || || | | ||||| ||||||||| || | | Sbjct 424029 TGTCGTAGATGCCTTCGATCGAGTCGTCCTTCATGGTGACCAGGAAACACGACGAAAGCT 424088 Query 23730 GCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCG 23789 ||| | ||||| |||| ||| || ||||| |||||| |||||||| | | | Sbjct 424089 GCGGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGG 424148 Query 23790 ACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGA 23849 |||| || ||||||| | | | || || ||||| | ||||| || |||| ||||| Sbjct 424149 ACATGAGGTTGTACGACTGCAAGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGA 424208 Query 23850 CGCGCATCATCATGTATTGAGG 23871 ||||||| | ||||| ||| || Sbjct 424209 CGCGCATGAGCATGTGTTGCGG 424230 >seq55 Length=539833 Score = 118 bits (130), Expect = 9e-22 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || || |||||| ||||| |||||||| || ||||| ||||||||| |||| || || | Sbjct 107301 AATCAGGCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTC 107360 Query 31249 GTCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 |||||||| |||| | ||||| || ||| | |||||||||||| | || || | Sbjct 107361 GTCCGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCCCCAG 107419 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATT 31367 ||||||| ||||| || ||||| ||||| ||| | || || || || ||| | Sbjct 107420 ACCAGCAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACT 107479 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | ||||| ||||| || ||||| || || |||| || Sbjct 107480 ACAACATCCAAAAGGAGTCGACCCTCCACTTGGTGCT 107516 >seq36 Length=1841281 Score = 113 bits (124), Expect = 4e-20 Identities = 170/239 (71%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| ||||| ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 1559913 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1559854 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | ||||||||||||| | || ||||||||| Sbjct 1559853 ACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATCCCCCCCGACCAG 1559795 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || ||||| ||| | || || || | ||||| ||| Sbjct 1559794 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 1559735 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || ||||| || ||||| || || |||| || | ||| | || ||| ||||||| Sbjct 1559734 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 1559676 >seq20 Length=1456699 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| ||||||||| |||| || || | || Sbjct 789389 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 789448 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | | ||||||||||| | || || ||||| Sbjct 789449 GACACGATCGACAATGTCAAGACCAAGATTCAAG-ACAAGGAAGGCATTCCCCCAGACCA 789507 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| ||||| ||| | || || || | ||||| || Sbjct 789508 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 789567 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || ||||| || || |||| || Sbjct 789568 CATTCAGAAGGAGTCGACGCTCCACTTGGTGCT 789600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765998810240