Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12-
23] 72 sequences; 28,653,577 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq45 176 5e-39
seq36 147 2e-30
seq20 147 2e-30
seq55 136 4e-27
>seq45
Length=1665130
Score = 176 bits (194), Expect = 5e-39
Identities = 173/223 (78%), Gaps = 3/223 (1%)
Strand=Plus/Plus
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
|||||| || ||||| ||||| || |||||| | ||| || || || ||| |||||
Sbjct 331616 GATTTGGAAACCGTAGAAGCATCGAGCCTCGGCGGACTGGACCTCACCAGAGAATCGCTC 331675
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
||||| || |||||||| ||||||||| ||||||||||||||| || |||||| |||
Sbjct 331676 GACCAAGTTCTCGTTGACAATGCCGTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGAT 331735
Query 133338 GAAATGGCGCTCGTTG---TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394
||| | |||||||| | | | | | ||||||||| || |||||||||||| |||
Sbjct 331736 GAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTC 331795
Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437
|| ||| ||| |||||||||| || |||||||| || ||||||
Sbjct 331796 CATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCCTTCTTGTAC 331838
Score = 89.7 bits (98), Expect = 5e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Plus
Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944
||||| | ||||||||||||| || | ||||||||| | |||||||| ||||||
Sbjct 331006 GAACAAGAGGCAAGCAAAGTCGGTGTGAAGGCCCTCGTCACGCGAAATGAGCTCGTTGGA 331065
Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGG 132991
||| ||||| |||||||| | ||| || || |||||||| || ||||
Sbjct 331066 GAAGGTCAATCCGGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGG 331112
>seq36
Length=1841281
Score = 147 bits (162), Expect = 2e-30
Identities = 163/215 (76%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304
||||||| ||||| || || ||||||||||| ||||||||| |||| |||||| | |||
Sbjct 1559913 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1559854
Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
||| || | | | | |||| || |||| ||||| || || || ||| |||||||
Sbjct 1559853 ACA-CGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 1559795
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
|| || ||||| | || ||||| ||||| || || | ||||| ||| || ||||||
Sbjct 1559794 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 1559735
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||||||| ||||||| || |||||||| ||
Sbjct 1559734 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCG 1559700
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935
|||||| |||||| | | || || ||| ||| | || ||||| | ||| |||||
Sbjct 398336 CAAATGACTGAACAAGAGGACGGCGAATTCGGTATGAAGACCTTCGTCGCGGGATATGAG 398395
Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995
|||||| |||| | ||||||||||||||| ||||||||||||||||| |||| |||
Sbjct 398396 CTCGTTGGAGAAACAGAGGCCGGGCATGAGGCCTCGTTTTTTGAGCCAAAAGATGGAGGC 398455
Query 132996 GAA 132998
|||
Sbjct 398456 GAA 398458
>seq20
Length=1456699
Score = 147 bits (162), Expect = 2e-30
Identities = 171/228 (75%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || | || ||||| || ||||| |||| || ||| || |
Sbjct 547010 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACGATCACGCTCGAGGTTGAGTCCTCG 547069
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || || | ||||| ||||| |||||| | |||||
Sbjct 547070 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 547128
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || ||||| | ||||||||| ||||| || || | || || ||| |||||||||
Sbjct 547129 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAA 547188
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
|||||| ||||| |||||||||| |||||||| ||| | |||||||
Sbjct 547189 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGG 547236
Score = 136 bits (150), Expect = 4e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||||| |||||||| || |||||| |||| |||||| || |
Sbjct 789389 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 789448
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| || | | | |||| || || | ||||| || || |||||| | |||||
Sbjct 789449 GACA-CGATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 789507
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| | || | ||||||||| ||||| || || | ||||| ||| || |||||
Sbjct 789508 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 789567
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||| || ||||| ||||||| || ||||||||||||
Sbjct 789568 CATTCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGT 789604
Score = 122 bits (134), Expect = 9e-23
Identities = 158/216 (73%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| || || || || | || ||||| || ||||| | || || ||| || |
Sbjct 546782 ATGCAAATCTTTGTCAAGACCTTAACCGGCAAGACGATCACGCTTGAGGTTGAGTCCTCG 546841
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | | |||| | || | || || | || || ||||| |||||| | |||||
Sbjct 546842 GACACGATCGACAACG-TAAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 546900
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||| || ||||| | ||||||||| ||||| || || | || || ||| ||| |||||
Sbjct 546901 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGATTACAA 546960
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||| ||||| |||||||||| |||||||| ||
Sbjct 546961 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCG 546996
>seq55
Length=539833
Score = 136 bits (150), Expect = 4e-27
Identities = 160/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305
|||||| ||||| || || || |||||||| || |||||| |||| |||||| | ||||
Sbjct 107307 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 107366
Query 38306 CAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364
|| || | | | | |||| || |||| ||||| || || || ||| | ||||| |
Sbjct 107367 CA-CGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 107425
Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424
| || ||||| | ||| ||||| ||||| || || | |||||| | |||||||||||
Sbjct 107426 AACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 107485
Query 38425 TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
|||||||||| |||| || || |||||||| ||
Sbjct 107486 TCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCG 107519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172349844480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |