Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12- 23] 72 sequences; 28,653,577 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq41 253 2e-61 seq39 123 3e-22 seq20 107 2e-17 seq45 105 8e-17 >seq41 Length=447122 Score = 253 bits (280), Expect = 2e-61 Identities = 341/471 (72%), Gaps = 19/471 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 423866 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 423925 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||| | ||||| ||||| | ||||| | || ||| Sbjct 423926 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 423985 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 423986 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 424045 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||||||| |||||||| || || || |||||||| |||||||| | ||| ||| Sbjct 424046 ATCGAGTCGTCCTTCATGGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 424105 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 |||||||||||||| |||| || ||| || | || |||||| || ||| | Sbjct 424106 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTACGAC 424165 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 424166 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGACGGCGAC 424209 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 |||||||||||||| || || || ||| |||| |||| || | | || ||||| Sbjct 424210 GCGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 424268 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | ||| ||| |||||||||| || | ||||||||||||| Sbjct 424269 AGCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 424319 Score = 122 bits (134), Expect = 1e-21 Identities = 294/451 (65%), Gaps = 2/451 (0%) Strand=Plus/Plus Query 1628151 GGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTT 1628210 ||||| ||| ||| || |||||||||||||| ||| | |||| | |||| || ||||| Sbjct 423415 GGGCGCCGAGTACTCGATGATCTCGGTGCACAAGTTCGACGACTTGATCGTGCCAAGGTT 423474 Query 1628211 CTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTC 1628270 || ||||| | | ||| |||||||||||| ||||||| | || |||||| || Sbjct 423475 CTTTTGGTTCGATTTTTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTC 423534 Query 1628271 GATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGC 1628329 || ||| || | | || || |||| | || ||||||| | || | || |||| Sbjct 423535 GACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGC 423593 Query 1628330 GGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCA 1628389 |||||| || | |||| ||| ||||| | Sbjct 423594 GGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGA 423653 Query 1628390 GGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCA 1628449 ||||||| || || | || || ||||| | ||| |||| ||| | | | || || Sbjct 423654 GGCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCACTCGCTGGCGGCCTCGACACGCTCCA 423713 Query 1628450 TAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGC 1628509 |||| || || |||| || || | ||||| || || || ||| ||||||||||| Sbjct 423714 TAAACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACCTCCTCCTTGC 423773 Query 1628510 CGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGC 1628569 |||||||||| ||||| || | |||| | ||| |||||||| ||||| |||||| Sbjct 423774 CGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGA 423833 Query 1628570 AGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 423834 TCGCGAAGGCTCCGGGACGCTTGTTGCCACC 423864 Score = 118 bits (130), Expect = 1e-20 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 |||||||||||| |||| ||| || | |||||| | ||||||| ||||||||||| Sbjct 422254 CTGGTCGACGGTGAACTTGATCGCACCAACGGCGGCGCGCGTGCGCAAGTAGTACATGCC 422313 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGC 1627100 ||||| || || || ||| ||||| |||||||||||||| | | ||||| Sbjct 422314 CGTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGTGCCATCGTCGG 422373 Query 1627101 G-TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCG 1627159 | ||| | ||| | ||||||||| || |||||||| ||| | |||||||||| Sbjct 422374 GCTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCGCCTCGATCGGCCG 422432 Query 1627160 CCATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGG 1627218 || ||||| | | | ||| | | |||||| ||||||||| ||||||||||||| Sbjct 422433 ACAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGA 422491 Query 1627219 TCG 1627221 ||| Sbjct 422492 TCG 422494 >seq39 Length=1650036 Score = 123 bits (136), Expect = 3e-22 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1300653 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1300594 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| ||||||| |||| Sbjct 1300593 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCGA 1300537 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 1300536 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1300477 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 1300476 GGTGGACCTGCTTCAACACCTTG 1300454 Score = 123 bits (136), Expect = 3e-22 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1402506 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1402447 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| ||||||| |||| Sbjct 1402446 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCGA 1402390 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 1402389 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1402330 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 1402329 GGTGGACCTGCTTCAACACCTTG 1402307 >seq20 Length=1456699 Score = 107 bits (118), Expect = 2e-17 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 316151 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCTGTG 316092 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 316091 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 316033 Query 19172 ATTCGAGATTGGCAGCGGGTT 19192 ||||||||||| |||||| Sbjct 316032 TTTCGAGATTGGTTCCGGGTT 316012 >seq45 Length=1665130 Score = 105 bits (116), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| ||| | | ||||| ||| || | ||| |||||||| |||| || Sbjct 97536 GCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCGAGGTTTGGATCTCTCGCGACGAGA 97595 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| |||| || |||| Sbjct 97596 TGGTCGACTTGCGGTTGT---AGCCCGCGAGTTTGGATGCCTCGGTGGCGATACGCTCGA 97652 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| || ||||| Sbjct 97653 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCGGTGTCGG 97712 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||| ||| Sbjct 97713 GGTGGACCTGCTTCAACACTTTG 97735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107133291342824