Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12- 23] 72 sequences; 28,653,577 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq41 210 3e-48 seq39 140 5e-27 seq45 127 3e-23 seq20 86.0 1e-10 >seq41 Length=447122 Score = 210 bits (232), Expect = 3e-48 Identities = 202/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 423866 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 423925 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||| | ||| | ||||| | ||||| | || ||| Sbjct 423926 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 423985 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||||||||| ||| Sbjct 423986 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 424045 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| |||||||| | ||| || |||||||| |||||| | | ||| ||| Sbjct 424046 ATCGAGTCGTCCTTCATGGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 424105 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 424106 GCGTTGAAGAGCGTCGGCG 424124 Score = 145 bits (160), Expect = 1e-28 Identities = 300/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||| ||| | |||| | | ||||| |||||| Sbjct 423416 GGCGCCGAGTACTCGATGATCTCGGTGCACAAGTTCGACGACTTGATCGTGCCAAGGTTC 423475 Query 2071624 TGCTGGTT-GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTC 2071682 | ||||| | | | | ||| |||||||||||| |||||| | || || || || Sbjct 423476 TTTTGGTTCGATTTTTTGTTTG-CGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTC 423534 Query 2071683 GATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG 2071742 || ||| || | || || |||||| | ||||||| | || || | ||||| Sbjct 423535 GACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCGCG 423594 Query 2071743 GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAG 2071802 ||||| | | |||| || | |||| | | ||||| || Sbjct 423595 GCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAG 423654 Query 2071803 GCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCAT 2071862 |||||| || || | ||||| ||||| | ||| |||| | | | | | || || ||| Sbjct 423655 GCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCACTCGCTGGCGGCCTCGACACGCTCCAT 423714 Query 2071863 AAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCC 2071922 |||||| ||| |||| || | | |||||||| || || ||| |||||||||||| Sbjct 423715 AAACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACCTCCTCCTTGCC 423774 Query 2071923 GTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCA 2071982 ||||||||| ||||| || | |||| || ||| |||||||| ||||| |||||| Sbjct 423775 GTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGAT 423834 Query 2071983 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 423835 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 423864 Score = 105 bits (116), Expect = 1e-16 Identities = 173/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || |||| | || ||||||| ||||||||||| Sbjct 422255 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 422314 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| || || || ||| ||||| |||||||||||||| | | ||| ||| Sbjct 422315 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GCTGTGCCATCGTCG 422372 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||||||||| || |||||||| ||| | || |||||| Sbjct 422373 GGCTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCGCCTCGATCGGCC 422431 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | || ||||| | | | ||| || | |||||| ||||||||| | | ||||||||| Sbjct 422432 GACAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAG 422490 Query 2069487 AT 2069488 || Sbjct 422491 AT 422492 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| ||||| ||| | Sbjct 423115 CGCGGCGTGGTAGATGGTCTCGAAGATC-TGCTTGTTGAGCTTGCGCGCCTCGGGTGAAT 423173 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 423174 CGAACGGCATCGCCAAC--GCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 423231 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | | |||||| || || |||| ||||| |||||| Sbjct 423232 GGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 423291 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 423292 GATGCGGTTCAAGTTG 423307 >seq39 Length=1650036 Score = 140 bits (154), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 1300677 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 1300618 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 1300617 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 1300561 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| ||||| Sbjct 1300560 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCG 1300501 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 1300500 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 1300454 Score = 140 bits (154), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 1402530 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 1402471 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 1402470 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 1402414 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| ||||| Sbjct 1402413 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCG 1402354 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 1402353 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 1402307 >seq45 Length=1665130 Score = 127 bits (140), Expect = 3e-23 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| ||| || | Sbjct 97512 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCG 97571 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||| |||||||| || | ||| || ||||| |||| || ||| || | Sbjct 97572 AGGTTTGGATCTCTCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGTTTGG 97628 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| |||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 97629 ATGCCTCGGTGGCGATACGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 97688 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||| ||| Sbjct 97689 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACTTTG 97735 Score = 116 bits (128), Expect = 6e-20 Identities = 147/199 (74%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 796150 GCCTCGG-GTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 ||||||| | ||| ||||||| ||| || || ||| |||||| || ||||| Sbjct 331641 GCCTCGGCGGACT-GGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACAATGCC 331699 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||||||||||||||||||| ||| |||| ||||||||| |||| Sbjct 331700 GTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAG 331759 Query 796269 C---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | | |||||| | | |||| | | ||| | ||| ||||||||||||||||| Sbjct 331760 CTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCCATCTCTTCGGCGGTCCAAAAGGA 331819 Query 796326 GGCCTCGGCCTTTTTGTAC 796344 ||||||||||| |||||| Sbjct 331820 TGCCTCGGCCTTCTTGTAC 331838 >seq20 Length=1456699 Score = 86.0 bits (94), Expect = 1e-10 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 || || || || ||||||||| | |||||||||| || ||||||| | || ||| Sbjct 399301 CTCCCACCGGGTCGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGA 399360 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 |||||||| || ||||| ||| ||||||| | | ||||||| || || || || | Sbjct 399361 GCCCAGCAAGCGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTT 399420 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 || |||||| | | ||||||| | | ||||| || |||||||||||| | Sbjct 399421 GCGTGCAACCAGAGCAACAAAATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGG 399480 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434 | || | || ||||| ||| || | |||| ||| |||||| ||| ||| Sbjct 399481 TACTCGAGGCTGACCGATGCCGAGTTGTTGAGGCGTTTGCTGGAGATTTGCGAAATTGAA 399540 Query 2019435 AAGGT 2019439 ||||| Sbjct 399541 AAGGT 399545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916238741031608