Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12- 23] 72 sequences; 28,653,577 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq41 219 6e-51 seq39 127 3e-23 seq45 111 2e-18 >seq41 Length=447122 Score = 219 bits (242), Expect = 6e-51 Identities = 204/259 (79%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 259923 CGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGG 259982 |||| |||||||| || ||||| ||||| | ||||||| ||||||||| || ||| | Sbjct 424124 CGCCGACGCTCTTCAACGCCGGAACGCCTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCA 424065 Query 259983 ACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCT 260042 |||||||| ||| |||||||| |||||||| |||||||||||| |||||||||||||| Sbjct 424064 CCATGAAGGACGACTCGATCGAAGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCT 424005 Query 260043 CCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACG 260102 ||||| | ||||| || |||||||| | ||||| | ||||| | ||| | ||| Sbjct 424004 CCAAGACCGCCGGTGGTATCGGTTTGAGCATCCACAACATCCGCGCGACCGGCTCTTACA 423945 Query 260103 TGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACA 260162 | || ||||| |||||| | || |||||| | || |||||||| || || | ||| ||| Sbjct 423944 TCGCCGGCACGAACGGCTACTCGAACGGCATCGTCCCCATGCTCCGTGTCTACAACAACA 423885 Query 260163 CGGCGCGCTACGTCGACCA 260181 | ||||||||||||||||| Sbjct 423884 CCGCGCGCTACGTCGACCA 423866 Score = 120 bits (132), Expect = 4e-21 Identities = 301/458 (66%), Gaps = 10/458 (2%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || || |||||||| ||| || Sbjct 423864 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCATGGCACGCTGACGTC 423805 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| ||||||||||||| ||| |||| || |||| || Sbjct 423804 TTCGAGTTCCTGGACCTTCGCAAGAACCACGGCA----AGGAGGAGGTCC--GCGCTCGT 423751 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| ||||||||| || | | | ||| | || Sbjct 423750 GATCTCTTCTTTGCGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCCGCCAGC 423691 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| | || || |||||||| |||||| |||||||| | Sbjct 423690 GAGTGGCCCCTCTTCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAG 423631 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNCGCGGACCGTCG-TGCCCGC 262086 || |||| | | ||| | || | || | ||||| Sbjct 423630 TTCCGCGCCTTGTTCGAGAAATACGAAAAGGAGGGCCGCGCCAAGA-AGACGATCCCCGC 423572 Query 262087 ACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGT 262146 | | || | |||| || ||| | | ||||| |||| ||||||| || | |||| | Sbjct 423571 GCAAAAGCTTTGGTACGCGATTCTTGAAGCCCAGGTCGAAACCGGCAACCCGTTCATGCT 423512 Query 262147 CTACAAGGACGCCGTCAACCTGACCAGC-AACCAGCAGAACCTGGGCACCACGACAGAGG 262205 |||||||||||||| ||| | | | | ||||| ||||||| ||||| | | | Sbjct 423511 CTACAAGGACGCCG-CAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGT 423453 Query 262206 CCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCC 262243 | ||| |||||||||||||| || ||| ||| ||||| Sbjct 423452 CGAACTTGTGCACCGAGATCATCGAGTACTCGGCGCCC 423415 Score = 100 bits (110), Expect = 4e-15 Identities = 174/245 (71%), Gaps = 6/245 (2%) Strand=Plus/Minus Query 263172 CGATCTCAAGGCTCTCTTCAAGACCGTGTGGGAGGTGCC-CAACCGGGTGACCATTGATA 263230 |||||||||||| ||| ||||||||| |||||| | | ||| | | | || ||| Sbjct 422494 CGATCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACT-ATTATCGATC 422436 Query 263231 TGGCGGCCGACCGCGCGCCCTATGTCGACCAGAGCCAGTCGCTCAACCTGTACCTCGCCG 263290 || ||||||| || | ||| |||||||| || ||||||||| | || | | || Sbjct 422435 TGTCGGCCGATCGAGGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTT-GTCG 422377 Query 263291 A-CCCGACGGCCG-AGAGCATCACGTCGATGCACGCCTATGCGTGGCGTCGCGGCCTCAA 263348 | ||||||| | | ||| |||||||||||||| ||| | ||| || || || || Sbjct 422376 AGCCCGACGATGGCACAGC-TCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAA 422318 Query 263349 GACTGGCATGTACTATCTGCGCACCCGGCCCGCTGCCAACGCCATTCAATTCACCGTCGA 263408 ||| ||||||||||| ||||||| || |||| | || || | ||||||||||| Sbjct 422317 GACGGGCATGTACTACTTGCGCACGCGCGCCGCCGTTGGTGCGATCAAGTTCACCGTCGA 422258 Query 263409 TCAGG 263413 |||| Sbjct 422257 CCAGG 422253 >seq39 Length=1650036 Score = 127 bits (140), Expect = 3e-23 Identities = 169/230 (73%), Gaps = 16/230 (7%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 1300454 CAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 1300507 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC--GC 725033 |||| | |||||||| ||||||||||| |||| ||||||| ||||||||| ||| Sbjct 1300508 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCACCGAGGC--GTCCAAG 1300565 Query 725034 CTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| ||| |||| ||||| || ||| ||||||||||||||||| | || Sbjct 1300566 CTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTC 1300622 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1300623 CGATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1300672 Score = 127 bits (140), Expect = 3e-23 Identities = 169/230 (73%), Gaps = 16/230 (7%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 1402307 CAAGGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 1402360 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC--GC 725033 |||| | |||||||| ||||||||||| |||| ||||||| ||||||||| ||| Sbjct 1402361 GATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCACCGAGGC--GTCCAAG 1402418 Query 725034 CTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||| ||| |||| ||||| || ||| ||||||||||||||||| | || Sbjct 1402419 CTCGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCGGTC 1402475 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1402476 CGATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1402525 >seq45 Length=1665130 Score = 111 bits (122), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 12/230 (5%) Strand=Plus/Minus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||| ||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 97735 CAAAGTGTTGAAGCAGGTCCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 97682 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||| | |||||||| ||||||||||| |||| || |||| ||||||||| || Sbjct 97681 CATCCTCAACTCGTTCGTCAACGACATCTTCGAGCGTATCGCCACCGAGGCATCCAAACT 97622 Query 725036 GGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||| ||| |||| ||||| || ||| |||| |||||||| ||| | || || Sbjct 97621 CGCGGGCT---ACAACCGCAAGTCGACCATCTCGTCGCGAGAGATCCAAACCTCGGTTCG 97565 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||| | | ||| ||| || ||| ||||||| |||| || ||||||| Sbjct 97564 CTTGATCCTCCCCGGAGAATTGTCCAAGCACGCCATCTCGGAAGGCACCA 97515 Score = 111 bits (122), Expect = 2e-18 Identities = 171/238 (72%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| | |||| || ||||||||||| ||||||||||||||||| ||| | ||| Sbjct 331850 GATCTGGGCACAGTAC-AAGAAGGCCGAGGCATCCTTTTGGACCGCCGAAGAGATGGACT 331792 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCA 1455891 | | |||| | | |||||| ||| | |||||||||| | |||||| Sbjct 331791 TGTCCAAGGACATGCACGACTGGGACAACAAGCTCAAGCCCGACGAGCGCTACTTCATCT 331732 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||||||||| ||||||||||| ||| ||||| || ||||||| ||| || Sbjct 331731 CGCACGTCCTCGCCT-TTTTCGCCGCCTCCGACGGCATTGTCAACGAGAACTTGGTCGAG 331673 Query 1455952 CGCTT-TATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || || | || |||||||| | | ||||| || | || ||||| ||||| ||| Sbjct 331672 CGATTCTCTG-GTGAGGTCCAGTCCGCCGAGGCTCGATGCTTCTACGGTTTCCAAATC 331616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177804255467664