Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12- 23] 72 sequences; 28,653,577 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq20 136 1e-26 seq36 104 7e-17 seq55 91.5 4e-13 >seq20 Length=1456699 Score = 136 bits (150), Expect = 1e-26 Identities = 171/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||||||||| || | | || || | || || || ||||| || || || || | Sbjct 547016 TTTGCATACCACCTCGGAGGCGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGT 546957 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || || || || || || ||||| |||||||| || | Sbjct 546956 AATCGGCGAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGT 546897 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || ||||||||||| ||||| ||||| || || |||| || || | Sbjct 546896 CTGGGGGAATGCCCTCCTTATCCTGAATCTTAGCCTTTACGTTGTCGATCGTGTCCGAGG 546837 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| ||||| || | ||||| ||||||| || || ||||| || ||||| Sbjct 546836 ACTCAACCTCAAGCGTGATCGTCTTGCCGGTTAAGGTCTTGACAAAGATTTGCAT 546782 Score = 113 bits (124), Expect = 1e-19 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | || || || ||||| || ||||| || | Sbjct 789395 TTTGCATACCACCACGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGT 789336 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | | || || ||||| || || || || || |||||||| |||||||| || | Sbjct 789335 AATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGT 789276 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || || || || || | || ||||| ||||||| || || | Sbjct 789275 CTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATCGTGTCCGAGG 789216 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||| || || || || || || || || ||||| Sbjct 789215 ACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 789161 >seq36 Length=1841281 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || || || ||||| ||||| || || ||||| | Sbjct 1559687 ACCACCACGCAGGCGGAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGC 1559746 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || || |||||||| ||||||||||| || || || Sbjct 1559747 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGGGG 1559806 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || ||||| || ||||| || || | || || || || |||| || || | || || Sbjct 1559807 GATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 1559866 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCA 140736 || || || | ||||| || || || || || || || || |||| Sbjct 1559867 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 1559913 >seq55 Length=539833 Score = 91.5 bits (100), Expect = 4e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140508 ATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCA 140567 |||||||| || | | || || | || || || ||||| ||||| || || || || Sbjct 107534 ATACCACCTCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCG 107475 Query 140568 GATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGA 140627 | || || || ||||| || || || || || || ||||| ||||||||||| || || Sbjct 107474 GCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGG 107415 Query 140628 GGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCA 140687 || || ||||| || || || || || | || || || || |||| || || | || Sbjct 107414 GGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCG 107355 Query 140688 ACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGC 140735 || || || || | ||||| || || || || || || || || ||| Sbjct 107354 ACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGC 107307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253002177816