Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12- 23] 72 sequences; 28,653,577 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq41 315 8e-81 seq36 127 2e-24 >seq41 Length=447122 Score = 315 bits (348), Expect = 8e-81 Identities = 537/776 (69%), Gaps = 2/776 (0%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 |||||||||||||| | || ||||||||| ||||| | ||| ||| || ||||| Sbjct 424217 TCATGCGCGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTCTTGCAGTCGTACA 424158 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | |||||||| |||||| |||| || || |||||||| || ||| Sbjct 424157 ACCTCATGTCCGAGCGCTACTTTACCCACGCCTCGCCGACGCTCTTCAACGCCGGAACGC 424098 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| || |||||||| | |||||||| ||||||||||| |||| Sbjct 424097 CTCACCCGCAGCTTTCGTCGTGTTTCCTGGTCACCATGAAGGACGACTCGATCGAAGGCA 424038 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||| || | |||||||||| | |||||||||||| | Sbjct 424037 TCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTGA 423978 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| || ||||||||| | | | | Sbjct 423977 GCATCCACAACATCCGCGCGACCGGCTCTTACATCGCCGGCACGAACGGCTACTCGAACG 423918 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || |||||||| |||| ||||||||| || || |||||| |||| ||||| Sbjct 423917 GCATCGTCCCCATGCTCCGTGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 423858 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| |||||||||||||| |||||||| ||| | | |||| Sbjct 423857 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCATGGCACGCTGACGTCTTCGAGT 423798 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || ||| || || | || ||| | ||| ||||| || || | Sbjct 423797 TCCTGGACCTTCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCTCGTGATCTCTTCTTTG 423738 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || |||||||| || || || ||| | || ||| | | |||||| ||| Sbjct 423737 CGCTCTGGATTCCCGATCTGTTTATGGAGCGTGTCGAGGCCGCCAGCGAGTGGCCCCTCT 423678 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| || |||||||||||| | ||||| || || ||||| || ||| Sbjct 423677 TCTGCCCCGCTGAAGCCCCCGGCCTCCACGAAGTCTATGGCGAAGAGTTCCGCGCCTTGT 423618 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || |||| | |||||||| |||||||| | || |||| || | ||| Sbjct 423617 -TCGAGAAATACGAAAAGGAGGGCCGCGCCAAGAAGACGATCCCCGCGCAAAAGCTTTGG 423559 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | || || || | |||||| || || || | |||| |||| ||||||||| | Sbjct 423558 TACGCGATTCTTGAAGCCCAGGTCGAAACCGGCAACCCGTTCATGCTCTACAAGGACGCC 423499 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 | ||| | || ||||| |||||| | ||| ||||| ||| ||||| || Sbjct 423498 GCAAACAAAAAATCGAACCAAAAGAACCTTGGCACGATCAAGTCGTCGAACTTGTG 423443 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || |||||| | | || |||| | | || || || Sbjct 422491 TCTCAAGGCCATCTACAAGACCGTCTGGGAGCTCTCGCAAAAGACTATTATCGATCTGTC 422432 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || ||||| || || | |||||||||||| || || || |||||| | || || || Sbjct 422431 GGCCGATCGAGGCGCCTTCATCGACCAGTCGCAATCGCTCAACATCCACTTGTCGAGCCC 422372 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| || | | ||||||||||| ||||| |||||| ||||| |||||||| Sbjct 422371 GACGATGGCACAGCTCACGTCGATGCACTTCTACGGCTGGAAGCGAGGACTGAAGACGGG 422312 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || |||||| Sbjct 422311 CATGTACTACTTGCGCACGCGCGCC 422287 >seq36 Length=1841281 Score = 127 bits (140), Expect = 2e-24 Identities = 284/423 (67%), Gaps = 4/423 (1%) Strand=Plus/Minus Query 151874 ATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAA 151933 |||| || || || ||||| | || ||||||| | ||| || | || ||| ||| Sbjct 673167 ATCCCGTTCCAATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACC 673108 Query 151934 ACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCG 151993 | |||||| | ||||| ||||| | | ||||| | ||| | ||||| | Sbjct 673107 AAGACGGCTCGATGCTCTGACCATCATCGTTGAGGTATTCGAGCACGCTGTCATCAGCGG 673048 Query 151994 GATCGAATATCCGTCGAGTCATAGGACTCAAACG--CGTGAAGATGTATCGGGAGCTGGC 152051 ||| ||| | | || || || ||| | | || |||||||||||| || | | || Sbjct 673047 GATGGAAGACGCTACGCGTGAT-GGA-TGATACATTCGTGAAGATGTAACGAGCGGAAGC 672990 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 ||| || || |||||| ||| || || ||||| || || || ||||| | |||||| Sbjct 672989 CGCGTCTTTACCACCTTGCAGACGAGTACCAAATTGACCGTTCGGGTCGAGAATGTTGAG 672930 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 |||||||| || ||||| | || |||| | || ||||| |||| |||| ||| Sbjct 672929 GTTGTTGGACCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATTTC 672870 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 |||||| || ||||||| ||||| |||| ||| || |||| || | ||||| || || Sbjct 672869 ACCGTGATGGTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATCTC 672810 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | ||||| || ||||| || || | | |||||||| || ||||| || || Sbjct 672809 CTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACCTTGCGTTGACCCGGTTTGAACCC 672750 Query 152292 GTC 152294 || Sbjct 672749 ATC 672747 Score = 86.0 bits (94), Expect = 7e-12 Identities = 87/111 (78%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| | |||||| ||||| ||||||| ||||||||| || || ||||||||||| Sbjct 670994 GTTGGCCAACTTGGCTCCGTAACCGTTCCTACCACCGGTGACCTTCTCCTCCTCGTCGTC 670935 Query 119143 GTAGTTGGAGCTGGTCAAAAG-GTGCCCAAAGATGAGCTCGGGGATCCAAA 119192 |||||||| ||| | || ||| |||||||| | || |||||||||| Sbjct 670934 ATAGTTGGAAGAGGTGAGCAGAGTG-CCAAAGATCATTTCCGGGATCCAAA 670885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215507505600