Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12-
23] 72 sequences; 28,653,577 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq20 111 1e-19
seq36 96.9 2e-15
>seq20
Length=1456699
Score = 111 bits (122), Expect = 1e-19
Identities = 145/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || || ||||| || |||||||| ||||| || || ||| ||
Sbjct 789161 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 789220
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || || || | | ||||| || ||| | || ||||| ||
Sbjct 789221 GACACGATTGACAATGTCAAGACCAAGA-TCCAAGACAAGGAGGGTATTCCCCCAGACCA 789279
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || ||||| ||||| || || || || | ||||| | | ||||||||
Sbjct 789280 ACAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 789339
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 789340 CATTCAGAAGGAGTCGAC 789357
Score = 107 bits (118), Expect = 1e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || || || ||||| || |||||||| ||||| || || ||| ||
Sbjct 789389 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 789448
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| | || ||| | || || || | || ||||| ||||| | || ||||| ||
Sbjct 789449 GACACGATCGACAATGTCAAGACCAAGA-TTCAAGACAAGGAAGGCATTCCCCCAGACCA 789507
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||||| || || || || ||||| || || || || | ||||| | | ||||||||
Sbjct 789508 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 789567
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 789568 CATTCAGAAGGAGTCGAC 789585
Score = 102 bits (112), Expect = 6e-17
Identities = 143/198 (72%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| || ||||| || ||| | || || || || ||||| ||||| || || ||| ||
Sbjct 788933 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCTCG 788992
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
||||| |||| ||| | || || || | | ||||| || ||| | || ||||| ||
Sbjct 788993 GACACGATTGACAATGTCAAGACCAAGA-TCCAAGACAAGGAGGGTATTCCCCCAGACCA 789051
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| ||| | || ||||| ||||| || || || || | ||||| | | ||||||||
Sbjct 789052 ACAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 789111
Query 23790 CATACAAAAAGAGTCCAC 23807
||| || || ||||| ||
Sbjct 789112 CATTCAGAAGGAGTCGAC 789129
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 23605 CTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGAC 23664
||| | ||||| || || || || ||| | || || || |||||||| || || |||||
Sbjct 546776 CTTCAGATGCAAATCTTTGTCAAGACCTTAACCGGCAAGACGATCACGCTTGAGGTTGAG 546835
Query 23665 TCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724
||| ||||||| | || | |||| || ||| || || || || | || |||
Sbjct 546836 TCCTCGGACACGATCGACAACGTAAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCA 546895
Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784
|| ||||| ||| | || || || ||||| || || || || | || || | | ||||
Sbjct 546896 GACCAACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGAT 546955
Query 23785 TACAACATACAAAAAGAGTCCAC 23807
|||||||| || || ||||| ||
Sbjct 546956 TACAACATCCAGAAGGAGTCGAC 546978
>seq36
Length=1841281
Score = 96.9 bits (106), Expect = 2e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671
|||| || ||||| || ||||||||||| || || ||||| ||||| || || || | |
Sbjct 1559913 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 1559854
Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|||| | || || | || || || | | ||||| ||||| | || || || ||
Sbjct 1559853 ACACGATCGACAACGTCAAGACCAAGA-TCCAGGACAAGGAAGGCATCCCCCCCGACCAG 1559795
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || ||||||||||| || || || || | ||||| | | |||||||||
Sbjct 1559794 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 1559735
Query 23791 ATACAAAAAGAGTCCAC 23807
|| ||||| ||||| ||
Sbjct 1559734 ATCCAAAAGGAGTCGAC 1559718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338009303396576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |