Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015475.1_202016-12- 23] 72 sequences; 28,653,577 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq20 187 5e-42 seq36 185 2e-41 seq55 174 3e-38 seq51 95.1 3e-14 >seq20 Length=1456699 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || || || |||||||| || || Sbjct 789388 ACCACCACGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGC 789329 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || |||||||| | |||||||||||| || Sbjct 789328 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGG 789269 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||||||||||||| | || || | || || |||||||| | ||||| Sbjct 789268 AATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATCGTGTCCGAGGACTCGAC 789209 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||| | ||||| ||||| || ||||| Sbjct 789208 CTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 789161 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || |||| || | ||| || || || |||||||| || || Sbjct 789160 ACCACCGCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGC 789101 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || |||||||| | |||||||||||| || Sbjct 789100 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGG 789041 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 |||||||||||||||||||||||| | || || | || || |||||||| | ||||| Sbjct 789040 AATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATCGTGTCCGAGGACTCGAC 788981 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 788980 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 788933 Score = 176 bits (194), Expect = 9e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || || || || |||| || | ||| || || |||||||||||||| || Sbjct 547236 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 547177 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| ||||||||||| || || || || || ||||| | |||||||||||| ||| Sbjct 547176 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGA 547117 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| || || ||| | ||||| |||||||| | || || Sbjct 547116 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCAACC 547057 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || ||||| ||||| ||||| || ||||| Sbjct 547056 TCGAGCGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 547010 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || |||| || | ||| || || ||||||||||| || || Sbjct 547009 ACCACCTCGGAGGCGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGC 546950 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||| ||||||||||| || || || || || ||||| | |||||||||||| || Sbjct 546949 GAGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGG 546890 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| |||||||| || || ||||| || |||||| | ||||| |||||||| | || || Sbjct 546889 AATGCCCTCCTTATCCTGAATCTTAGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAAC 546830 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||||||||| || || || ||||| || || || ||||| Sbjct 546829 CTCAAGCGTGATCGTCTTGCCGGTTAAGGTCTTGACAAAGATTTGCAT 546782 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || || || |||| || | ||| || || || |||||||| || || Sbjct 789616 ACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGC 789557 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || || || |||||||| || || ||||| || Sbjct 789556 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGG 789497 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||||||||| ||||| | || || | ||||| |||||||| | ||||| Sbjct 789496 AATGCCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATCGTGTCCGAGGACTCGAC 789437 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||| | ||||| ||||| || ||||| Sbjct 789436 CTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 789389 >seq36 Length=1841281 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || |||| || | ||| || |||||||||||||| || || Sbjct 1559687 ACCACCACGCAGGCGGAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGC 1559746 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||||||||||| || || || ||||||||||| | |||||| ||||| || Sbjct 1559747 GAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGGGG 1559806 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || |||||||| |||||||| | || ||| | ||||| ||||| || | ||||| Sbjct 1559807 GATGCCTTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 1559866 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||||| ||||| ||||| ||||| | ||||| ||||| || |||| Sbjct 1559867 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 1559913 Score = 87.8 bits (96), Expect = 4e-12 Identities = 356/552 (64%), Gaps = 12/552 (2%) Strand=Plus/Minus Query 273516 TTGAAACCTTTGTACCACGGCTTCATGGCTACCATAGGTTCACCCTTCATCAGTCGCTCC 273575 ||||| || |||||| || | ||| | | |||| || ||| ||||| ||| Sbjct 673276 TTGAATCCACGGTACCAAGGGTGCATCGGTTCCATCTCCTCGCCCCTCATCTTGCGCCTT 673217 Query 273576 ACATTACCAATAATATCTTTAGGGTTGTAACTCGGAACGTTCGTAGACCAACCGGTGCCA 273635 | || | | |||||| | ||||||||| | || || || | ||| || || ||| Sbjct 673216 AAGTTGGCCACAATATCCGTGGGGTTGTAATTGGGCACCGACGAACTCCATCCCGTTCCA 673157 Query 273636 ATACCGGAAGAACCATTCACCAGAATACTCGGGATAATTGGGACATAATATTCGGGCTCA 273695 ||||| || ||||| |||| | | ||||| || |||| || | ||||| Sbjct 673156 ATACCCTCCGAGCCATTGACCAAAGCCATGGGGATGATGGGGATGTACCAAGACGGCTCG 673097 Query 273696 ATTTTATCACCATCGTCGTAAAGGTACTTCAACAAAGCA-TCATCCGTATCAACGAAAAC 273754 || | | |||||| |||| ||||| ||| | | || ||||| | | ||| || Sbjct 673096 ATGCTCTGACCATCATCGTTGAGGTA-TTCGAGCACGCTGTCATCAGCGGGATGGAAGAC 673038 Query 273755 CTTTCGCGTCT--GAGGATTCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTG 273812 | ||||| || ||| || |||||||| ||||| | || || ||| || Sbjct 673037 GCTACGCGTGATGGATGATACA--TTCGTGAAGATGTAACGAGCGGAAGCCGCGTCTTTA 672980 Query 273813 CCACCTTGCAGCCTCGAACCAAACTGACCCT-CGGGCAGTAGCCAGTTTATGTTGTTGCT 273871 ||||||||||| | | |||||| ||||| | |||| | || ||| | ||||||| Sbjct 672979 CCACCTTGCAGACGAGTACCAAATTGACCGTTCGGGTCG-AGAATGTTGAGGTTGTTGGA 672921 Query 273872 ACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTG 273931 |||||| | | || |||| | ||| || || || | | || ||||| || Sbjct 672920 CCCGACGAACTGTTGCGCCAGGCCGATGATGGTGCCTTGCAAACTCATTTCACCGTGATG 672861 Query 273932 ATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACATCGCTCGTCAA 273991 || || ||| ||||||| ||||| | || || | ||||| | || |||||| Sbjct 672860 GTACGCCGAGTGCTCGGCGACGTAACCGCCCAATTGTCCGACCTTGATCTCCTGCGTCAA 672801 Query 273992 GTTTCGCTTGAATG--CGGAATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAACG 274049 || |||||||| | ||| ||| ||||| || || || ||||||||||||| | Sbjct 672800 CTTGCGCTTGAAGCAACCGAA--CAAGACCTTGCGTTGACCCGGTTTGAACCCATCAATG 672743 Query 274050 ACCGATGGAATA 274061 || || || ||| Sbjct 672742 ACAGAGGGGATA 672731 >seq55 Length=539833 Score = 174 bits (192), Expect = 3e-38 Identities = 174/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || ||||| || |||| || | || || ||||||||||||||||| || Sbjct 107532 ACCACCTCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGC 107473 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | |||||||||||||| || || || ||||| ||||| | |||||| ||||| || Sbjct 107472 CAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGG 107413 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||||||||| | || ||| | ||||| ||||| || | ||||| Sbjct 107412 GATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 107353 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGC 283097 ||||| ||||||||||| ||||| | |||||| ||||| || ||| Sbjct 107352 CTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGC 107307 >seq51 Length=651083 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 316183 TAACGCCATTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAA 316242 |||||||| ||||||||||| | | |||| | ||||| || ||||||||||||||||| Sbjct 365016 TAACGCCACTGGATGTACTGCATCGCCGTCTTCTCAAGGTGCTCCTCGATGTGGTGGAAC 365075 Query 316243 GCGTGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTC 316284 ||||| || || ||||| || | ||||| || || |||||| Sbjct 365076 GCGTGTTGGGCGACGTACGCGACACGCAAGTTGGGGTGCTTC 365117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738234383088