Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015975.1_202016-12- 23] 161 sequences; 29,508,937 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq105 105 7e-18 seq80 104 2e-17 seq56 100 3e-16 >seq105 Length=561522 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | ||| ||||| ||||| ||||| ||||| | |||| || ||| Sbjct 279995 ACCAAGTGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGCGAGCGTGCGGCCATCCTCG 280054 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||| || || ||| |||| ||||||||||| ||||| || |||||||| ||||| | Sbjct 280055 AGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGG 280114 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || || | | || | ||||||| | ||| ||||| | ||| | |||||| Sbjct 280115 ATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTG 280174 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCA 139763 || || | || || ||||| ||||||| Sbjct 280175 CCCGTGAGGGTCTTGACGAAGATTTGCA 280202 >seq80 Length=1167844 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | ||| ||||| || |||||||| ||||| Sbjct 789157 CCACCGCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGCG 789098 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || || ||| |||| |||||||| || || || || Sbjct 789097 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGA 789038 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | || ||| ||| Sbjct 789037 ATACCCTCCTTGTCTTGGATCTTGGTCTTGACATTGTCAATCGTGTCCGAGGACTCGACC 788978 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | |||||||||||||| || || ||||| |||||||| Sbjct 788977 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 788931 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | || ||||| | ||| ||||| || || ||||| |||||| Sbjct 547003 CCACCTCGGAGGCGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 546944 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| || || || |||| |||||||| || || || || Sbjct 546943 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGA 546884 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| | || | |||| | || | ||||| | || ||| || Sbjct 546883 ATGCCCTCCTTATCC-TGAATCTTAGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAAC 546825 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | |||||||||||| || || || || || |||||||| Sbjct 546824 CTCAAGCGTGATCGTCTTGCCGGTTAAGGTCTTGACAAAGATTTGCAT 546777 >seq56 Length=195491 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | || | || ||||| | || ||||| ||||| ||||| || ||| | Sbjct 107528 CCACCTCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 107469 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || |||||||| || || || |||| ||||||||||| || || || Sbjct 107468 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 107409 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 107408 ATGCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 107349 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGC 139762 || | ||| | ||||||||| || | || || ||||| |||||| Sbjct 107348 TCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGC 107304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063001671200