Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015975.1_202016-12- 23] 161 sequences; 29,508,937 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq80 140 3e-28 seq56 113 4e-20 seq105 107 2e-18 >seq80 Length=1167844 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| || || || || || ||||| || || |||| || || || || || Sbjct 788929 AGATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTCGAGTCCT 788988 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || || | ||| || |||| || || |||||||||||||||||||| || || | Sbjct 788989 CGGACACGATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACC 789048 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||||||||| || ||||| ||||| ||| | |||||| |||||| || | ||||||| Sbjct 789049 AACAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACA 789108 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||| || || || || | || || || | || | ||||| ||| Sbjct 789109 ACATTCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGTCTCCGCGGTGGT 789158 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || ||| |||| || || || || || | Sbjct 789159 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 789218 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || || |||||||||||||||||||| || || ||| Sbjct 789219 GACACGATTGACAATGTCAAGACCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCAA 789278 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || ||||| ||||| ||| | |||||| |||||| || | ||||||||| Sbjct 789279 CAACGTCTCATCTTTGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 789338 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 789339 ATTCAGAAGGAGTCGAC 789355 Score = 129 bits (142), Expect = 5e-25 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| ||||| || || |||||||| || ||| |||| ||||| || || || Sbjct 546775 AGATGCAAATCTTTGTCAAGACCTTAACCGGCAAGACGATCACGCTTGAGGTTGAGTCCT 546834 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || || | ||| | | || || ||||| || |||||||| ||||| || || | Sbjct 546835 CGGACACGATCGACAACGTAAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACC 546894 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 |||||||||| || || || ||||| ||| | |||||| ||| || || ||||||||| Sbjct 546895 AACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGATTACA 546954 Query 22397 ACATTCAAAAAGAATCCAC 22415 |||| || || || || || Sbjct 546955 ACATCCAGAAGGAGTCGAC 546973 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || || || || || ||| |||| || || || || || | Sbjct 547005 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACGATCACGCTCGAGGTTGAGTCCTCG 547064 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| ||||| || || ||| Sbjct 547065 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAA 547124 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || ||||| ||| | |||||| ||| || || |||| |||||| Sbjct 547125 CAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAAC 547184 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 547185 ATCCAGAAGGAGTCGAC 547201 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | || || || ||| |||| || || || || || | Sbjct 789387 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 789446 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || |||||||||||||| || ||||| || || || Sbjct 789447 GACACGATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCAG 789506 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || ||||| ||| | |||||| |||||| || | ||||||||| Sbjct 789507 CAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 789566 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | || || || |||| | || || ||| Sbjct 789567 ATTCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGTCTCCGTGGTGGT 789614 >seq56 Length=195491 Score = 113 bits (124), Expect = 4e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 |||||| || || || ||| | || || || ||| |||| || || || || | |||| Sbjct 107304 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 107363 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 || | ||| | |||| || || ||||||||||| || || || || || || || Sbjct 107364 CACGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGCA 107423 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 |||||| || || |||||||| ||| | |||||| ||||||| | |||| |||||||| Sbjct 107424 ACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACAT 107483 Query 22401 TCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || ||| | || || || Sbjct 107484 CCAAAAGGAGTCGACCCTCCACTTGGT 107510 >seq105 Length=561522 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22220 TGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCG 22279 ||||||| || || || || | || || || || |||| || || || || | ||| Sbjct 280202 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 280143 Query 22280 ATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAAC 22339 | || | ||| | |||| || || || |||||||| || || || ||||| || | Sbjct 280142 ACACGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAGC 280083 Query 22340 AACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACA 22399 ||||||| || ||||||||||| ||| | |||||| |||||| || | |||||||||| Sbjct 280082 AACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAACA 280023 Query 22400 TTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | ||||| || || || | || || || | || |||| || ||| Sbjct 280022 TCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTGCGTGGTGGT 279976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727176414965