Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015975.1_202016-12-
23] 161 sequences; 29,508,937 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq56 104 2e-17
seq80 93.3 4e-14
seq105 86.0 6e-12
>seq56
Length=195491
Score = 104 bits (114), Expect = 2e-17
Identities = 163/230 (71%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||| | || | || || || | | | ||||||||||| |||||||||||| |
Sbjct 107528 CCACCTCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 107469
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || |||||||| || || |||| |||| ||||| || ||||| || ||
Sbjct 107468 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 107409
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| || | || || || | ||| || | ||||||| |||||| |
Sbjct 107408 ATGCCTTCCTTGTC-TTGGATCTTGGTCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 107351
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
|||||| || | ||| || || || ||||| || || || || ||| ||
Sbjct 107350 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGCCTG 107301
>seq80
Length=1167844
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|||||||| | ||| | || || || | | |||||||| || ||||||||||||
Sbjct 547231 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 547172
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| |||||||| || || || | |||| ||||| |||||||| || ||
Sbjct 547171 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGA 547112
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | ||||| | ||||| |
Sbjct 547111 ATGCCCTCCTTGTC-CTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCCGAGGACTCAA 547054
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| ||| | ||| || || |||| || || || || || |||||
Sbjct 547053 CCTCGAGCGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 547005
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| ||||||||||| || | || || |||||||| || || || | |
Sbjct 789352 GACTCCTTCTGAATGTTGTAATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCA 789293
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539
|||| ||||| |||||||| || || ||||| || ||||| ||| || | || |
Sbjct 789292 AAGATGAGACGTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACA 789233
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||| | ||||| ||||||| || | ||| || || || || || ||
Sbjct 789232 TTG-TCAATCGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTT 789174
Query 138600 TACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 789173 GACGAAGATTTGCAT 789159
>seq105
Length=561522
Score = 86.0 bits (94), Expect = 6e-12
Identities = 138/195 (71%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| |||||||| || | || || |||||||| || || |||| |
Sbjct 280010 GACTCCTTTTGGATGTTGTAATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCA 280069
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| ||||| || ||||| || || || ||||| ||||| || | || || || |
Sbjct 280070 AAGATGAGACGTTGCTGGTCGGGGGGGATGCCTTCCTTGTC-CTGGATCTTGGTCTTGAC 280128
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
||| || | ||||||| |||||| ||||||| || | || || || || || || |
Sbjct 280129 GTTG-TCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCT 280187
Query 138599 TTACAAAAATCTGCA 138613
| || || || ||||
Sbjct 280188 TGACGAAGATTTGCA 280202
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261401271920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |