Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015975.1_202016-12- 23] 161 sequences; 29,508,937 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq105 136 4e-27 seq56 131 2e-25 seq80 120 3e-22 >seq105 Length=561522 Score = 136 bits (150), Expect = 4e-27 Identities = 147/192 (77%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || | || ||||| | || ||||||||||||||||| || Sbjct 280012 CTCCTTTTGGATGTTGTAATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAA 280071 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||||| || | || ||||||||| |||||| |||||| ||| Sbjct 280072 GATGAGACGTTGCTGGTCGGGGGGGATGCCTTCCTTGTCCTGGATCTTGGTCTTGA-CGT 280130 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| ||| || || || | |||||||| |||||||| || || || | Sbjct 280131 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGA 280190 Query 46581 CAAAGATTTGCA 46592 | |||||||||| Sbjct 280191 CGAAGATTTGCA 280202 >seq56 Length=195491 Score = 131 bits (144), Expect = 2e-25 Identities = 145/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||||| | ||||| | || |||||||||||||||||||| Sbjct 107493 CTCCTTTTGGATGTTGTAGTCGGCCAAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAA 107434 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | || | || |||||||| |||||| |||||| ||| Sbjct 107433 GATGAGACGTTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 107375 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||||| ||| || || || | ||||| || |||||||| || || || | Sbjct 107374 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGA 107315 Query 46581 CAAAGATTTGC 46591 | ||||||||| Sbjct 107314 CGAAGATTTGC 107304 >seq80 Length=1167844 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 46360 TTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTA 46419 ||||| || || | | ||||| ||||| || | || |||||| || || ||||| Sbjct 789620 TTATTGACCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTA 789561 Query 46420 GTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || | || ||||| | || |||||||||||||| ||||| ||||| ||||||||||| Sbjct 789560 ATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTC 789501 Query 46480 GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA 46539 | || | || |||||||| ||||| |||||| | | | |||||| || Sbjct 789500 TGGGGGAATGCCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTCGATCGTGTCCGAGGA 789441 Query 46540 TTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | ||||| || |||||||| ||||| || || ||||||||||| Sbjct 789440 CTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 789387 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| | ||| | ||||| |||| || |||||| ||||| |||||||||| Sbjct 547231 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 547172 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || |||||||||||||| ||||| || | || || ||||| | || Sbjct 547171 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGA 547112 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545 | || |||||||||| ||||| ||||| ||| | | | |||||| || || || Sbjct 547111 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCAAC 547053 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||| || ||||| |||| || || || ||||||||||| Sbjct 547052 CTCGAGCGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 547005 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| |||| || |||||| ||||| ||||| |||| || || || | || || Sbjct 546986 CACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCGAGCGTACGGCCATCCTC 546927 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| ||||| || | || || ||||| | || | || |||||| ||| Sbjct 546926 GAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGAATGCCCTCCTTATCCTG 546867 Query 46504 GATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTT 46562 ||||| ||| | ||| | | | |||||| || || || || | |||||| || | Sbjct 546866 AATCTTAGCCTTTA-CGTTGTCGATCGTGTCCGAGGACTCAACCTCAAGCGTGATCGTCT 546808 Query 46563 TGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || | || || |||||||||||||| Sbjct 546807 TGCCGGTTAAGGTCTTGACAAAGATTTGCAT 546777 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || | || ||||| | || |||||||||||||| || || Sbjct 789350 CTCCTTCTGAATGTTGTAATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAA 789291 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | | ||||||||| |||||| |||||| | Sbjct 789290 GATGAGACGTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATT 789231 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | ||||| || |||||||| ||||| || || Sbjct 789230 GTCAATCGTGTCCGAGGACTCGACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGAC 789171 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 789170 GAAGATTTGCAT 789159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||| || | || ||||| | || |||||||||||||| || || Sbjct 789122 CTCCTTCTGAATGTTGTAATCCGCGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAA 789063 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || ||||| | || | | ||||||||| |||||| |||||| | Sbjct 789062 GATGAGACGTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGGATCTTGGTCTTGACATT 789003 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | |||||| || || || || | |||||||| ||||| |||| || || || Sbjct 789002 GTCAATCGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGAC 788943 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 788942 GAAGATTTGCAT 788931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237262457720