Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015975.1_202016-12- 23] 161 sequences; 29,508,937 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq114 176 5e-39 seq105 147 2e-30 seq80 147 2e-30 seq56 136 4e-27 seq99 91.5 1e-13 >seq114 Length=2116821 Score = 176 bits (194), Expect = 5e-39 Identities = 173/223 (78%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 |||||| || ||||| ||||| || |||||| | ||| || || || ||| ||||| Sbjct 1949038 GATTTGGAAACCGTAGAAGCATCGAGCCTCGGCGGACTGGACCTCACCAGAGAATCGCTC 1949097 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || |||||||| ||||||||| ||||||||||||||| || |||||| ||| Sbjct 1949098 GACCAAGTTCTCGTTGACAATGCCGTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGAT 1949157 Query 133338 GAAATGGCGCTCGTTG---TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| | |||||||| | | | | | ||||||||| || |||||||||||| ||| Sbjct 1949158 GAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTC 1949217 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTAC 133437 || ||| ||| |||||||||| || |||||||| || |||||| Sbjct 1949218 CATCTCTTCGGCGGTCCAAAAGGATGCCTCGGCCTTCTTGTAC 1949260 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 132885 GAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCT 132944 ||||| | ||||||||||||| || | ||||||||| | |||||||| |||||| Sbjct 1948428 GAACAAGAGGCAAGCAAAGTCGGTGTGAAGGCCCTCGTCACGCGAAATGAGCTCGTTGGA 1948487 Query 132945 GAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGG 132991 ||| ||||| |||||||| | ||| || || |||||||| || |||| Sbjct 1948488 GAAGGTCAATCCGGGCATCAAGCCACGCTTCTTGAGCCAGAAGATGG 1948534 >seq105 Length=561522 Score = 147 bits (162), Expect = 2e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| ||||| || || ||||||||||| ||||||||| |||| |||||| | ||| Sbjct 280202 TGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 280143 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| || | | | | |||| || |||| ||||| || || || ||| ||||||| Sbjct 280142 ACA-CGATCGACAACGTCAAGACCAAGATCCAGGACAAGGAAGGCATCCCCCCCGACCAG 280084 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || ||||| ||||| || || | ||||| ||| || |||||| Sbjct 280083 CAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAAC 280024 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| ||||||| || |||||||| || Sbjct 280023 ATCCAAAAGGAGTCGACGCTCCACTTGGTGCTCCG 279989 >seq80 Length=1167844 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || | || ||||| || ||||| |||| || ||| || | Sbjct 547005 ATGCAAATCTTCGTCAAGACCTTGACAGGCAAGACGATCACGCTCGAGGTTGAGTCCTCG 547064 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| ||||| |||||| | ||||| Sbjct 547065 GACACGATCGACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCA 547123 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | ||||||||| ||||| || || | || || ||| ||||||||| Sbjct 547124 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGACTACAA 547183 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||||||||| |||||||| ||| | ||||||| Sbjct 547184 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCGTCTCCGAGGCGG 547231 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||||| |||||||| || |||||| |||| |||||| || | Sbjct 789387 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCCTCG 789446 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || | | | |||| || || | ||||| || || |||||| | ||||| Sbjct 789447 GACA-CGATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGCATTCCCCCAGACCA 789505 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||||||||| ||||| || || | ||||| ||| || ||||| Sbjct 789506 GCAGCGATTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 789565 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || ||||| ||||||| || |||||||||||| Sbjct 789566 CATTCAGAAGGAGTCGACGCTCCACTTGGTGCTGCGT 789602 Score = 122 bits (134), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| || ||||| | || || ||| || | Sbjct 546777 ATGCAAATCTTTGTCAAGACCTTAACCGGCAAGACGATCACGCTTGAGGTTGAGTCCTCG 546836 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | || || ||||| |||||| | ||||| Sbjct 546837 GACACGATCGACAACG-TAAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGACCA 546895 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || ||||| | ||||||||| ||||| || || | || || ||| ||| ||||| Sbjct 546896 ACAACGTCTCATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGTACGCTCGCCGATTACAA 546955 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| |||||||||| |||||||| || Sbjct 546956 CATCCAGAAGGAGTCGACGCTGCACTTGGTGCTCCG 546991 >seq56 Length=195491 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38246 GCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGA 38305 |||||| ||||| || || || |||||||| || |||||| |||| |||||| | |||| Sbjct 107304 GCAAATCTTCGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGA 107363 Query 38306 CAGCGTGCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAAC 38364 || || | | | | |||| || |||| ||||| || || || ||| | ||||| | Sbjct 107364 CA-CGATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCAGC 107422 Query 38365 AGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACA 38424 | || ||||| | ||| ||||| ||||| || || | |||||| | ||||||||||| Sbjct 107423 AACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAACA 107482 Query 38425 TCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||| |||| || || |||||||| || Sbjct 107483 TCCAAAAGGAGTCGACCCTCCACTTGGTGCTCCG 107516 >seq99 Length=1308205 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| |||||| | | || || ||| ||| | || ||||| | ||| ||||| Sbjct 424645 CAAATGACTGAACAAGAGGACGGCGAATTCGGTATGAAGACCTTCGTCGCGGGATATGAG 424704 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 |||||| |||| | ||||||||||||||| ||||||||||||||||| |||| ||| Sbjct 424705 CTCGTTGGAGAAACAGAGGCCGGGCATGAGGCCTCGTTTTTTGAGCCAAAAGATGGAGGC 424764 Query 132996 GAA 132998 ||| Sbjct 424765 GAA 424767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171793402240