Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015975.1_202016-12- 23] 161 sequences; 29,508,937 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq85 253 2e-61 seq114 123 3e-22 seq80 107 2e-17 >seq85 Length=404085 Score = 253 bits (280), Expect = 2e-61 Identities = 341/471 (72%), Gaps = 19/471 (4%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||||||||| |||| ||| |||| ||||||||||| |||| |||||| || Sbjct 380822 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 380881 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 | |||||| ||||| || | ||| | ||||| ||||| | ||||| | || ||| Sbjct 380882 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 380941 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || || ||||| | ||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 380942 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 381001 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 ||||||||| |||||||| || || || |||||||| |||||||| | ||| ||| Sbjct 381002 ATCGAGTCGTCCTTCATGGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 381061 Query 1630306 GCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTA-GGT 1630364 |||||||||||||| |||| || ||| || | || |||||| || ||| | Sbjct 381062 GCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGACATGAGGTTGTACGAC 381121 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 || || |||||| || | |||| | || | | ||||| |||||| Sbjct 381122 TGCAAG-ACGCGC------------TCGATGTCGTGA---CCGTGGATGCCGACGGCGAC 381165 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCG-CGCACCTTGGTCAGGTAGG 1630483 |||||||||||||| || || || ||| |||| |||| || | | || ||||| Sbjct 381166 GCGCATGAGCATGTGTTGCGGGCGTTCGGCGACCTTGCCGTCGATGCGAAG-CAAGTAGG 381224 Query 1630484 ACCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGT 1630534 | || | ||| ||| |||||||||| || | ||||||||||||| Sbjct 381225 AGCGCTCGAGCGTCTTGAAGCCAAAGTAGTTGTAGCCGAAATCGCGGTCGT 381275 Score = 122 bits (134), Expect = 1e-21 Identities = 294/451 (65%), Gaps = 2/451 (0%) Strand=Plus/Plus Query 1628151 GGGCGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTT 1628210 ||||| ||| ||| || |||||||||||||| ||| | |||| | |||| || ||||| Sbjct 380371 GGGCGCCGAGTACTCGATGATCTCGGTGCACAAGTTCGACGACTTGATCGTGCCAAGGTT 380430 Query 1628211 CTGCTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTC 1628270 || ||||| | | ||| |||||||||||| ||||||| | || |||||| || Sbjct 380431 CTTTTGGTTCGATTTTTTGTTTGCGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTC 380490 Query 1628271 GATCTGCGCCGCGACGATGGCCGACCAGATCTGGCGCGCGGGCA-CGACAGTCCGCGCGC 1628329 || ||| || | | || || |||| | || ||||||| | || | || |||| Sbjct 380491 GACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCT-TCTTGGCGC 380549 Query 1628330 GGCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCA 1628389 |||||| || | |||| ||| ||||| | Sbjct 380550 GGCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGA 380609 Query 1628390 GGCCGGGCGCCTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCA 1628449 ||||||| || || | || || ||||| | ||| |||| ||| | | | || || Sbjct 380610 GGCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCACTCGCTGGCGGCCTCGACACGCTCCA 380669 Query 1628450 TAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGC 1628509 |||| || || |||| || || | ||||| || || || ||| ||||||||||| Sbjct 380670 TAAACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACCTCCTCCTTGC 380729 Query 1628510 CGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGC 1628569 |||||||||| ||||| || | |||| | ||| |||||||| ||||| |||||| Sbjct 380730 CGTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGA 380789 Query 1628570 AGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||||| || |||||| ||| || Sbjct 380790 TCGCGAAGGCTCCGGGACGCTTGTTGCCACC 380820 Score = 118 bits (130), Expect = 1e-20 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1626981 CTGGTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCC 1627040 |||||||||||| |||| ||| || | |||||| | ||||||| ||||||||||| Sbjct 379210 CTGGTCGACGGTGAACTTGATCGCACCAACGGCGGCGCGCGTGCGCAAGTAGTACATGCC 379269 Query 1627041 GGTCTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCGTCGC 1627100 ||||| || || || ||| ||||| |||||||||||||| | | ||||| Sbjct 379270 CGTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGAGCTGTGCCATCGTCGG 379329 Query 1627101 G-TCGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCG 1627159 | ||| | ||| | ||||||||| || |||||||| ||| | |||||||||| Sbjct 379330 GCTCGAC-AAGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCGCCTCGATCGGCCG 379388 Query 1627160 CCATGTCGATGGTGACCCGGTTG-GGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGG 1627218 || ||||| | | | ||| | | |||||| ||||||||| ||||||||||||| Sbjct 379389 ACAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAGA 379447 Query 1627219 TCG 1627221 ||| Sbjct 379448 TCG 379450 >seq114 Length=2116821 Score = 123 bits (136), Expect = 3e-22 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1305406 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1305347 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| ||||||| |||| Sbjct 1305346 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCGA 1305290 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 1305289 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1305230 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 1305229 GGTGGACCTGCTTCAACACCTTG 1305207 Score = 123 bits (136), Expect = 3e-22 Identities = 150/203 (74%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| ||| || ||| | | ||||| || || | ||||||||||||||||| || Sbjct 1407258 GCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCGAGGTCTGGATCTCGCGCGACGAGA 1407199 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| ||||||| |||| Sbjct 1407198 TGGTCGACTTGCGGTTGT---AGCCCGCGAGCTTGGACGCCTCGGTGGCGATGCGCTCGA 1407142 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || | ||||| |||||| ||||| || ||||| Sbjct 1407141 AGATGTCGTTGACGAACGAGTTGAGGATCAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1407082 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||||||| Sbjct 1407081 GGTGGACCTGCTTCAACACCTTG 1407059 Score = 105 bits (116), Expect = 8e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||| || ||| ||| | | ||||| ||| || | ||| |||||||| |||| || Sbjct 1714952 GCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCGAGGTTTGGATCTCTCGCGACGAGA 1715011 Query 1254403 TCGTG---TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGA 1254459 | || ||||| |||| || ||| || | ||||||||| |||| || |||| Sbjct 1715012 TGGTCGACTTGCGGTTGT---AGCCCGCGAGTTTGGATGCCTCGGTGGCGATACGCTCGA 1715068 Query 1254460 TCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGG 1254519 ||||||||||| |||||||| | || ||||| |||||| ||||| || ||||| Sbjct 1715069 AGATGTCGTTGACGAACGAGTTGAGGATGAGCATCGCCTTGTTCGAGATACCGGTGTCGG 1715128 Query 1254520 GGTGCACCTGCTTGAGCACCTTG 1254542 |||| |||||||| | ||| ||| Sbjct 1715129 GGTGGACCTGCTTCAACACTTTG 1715151 >seq80 Length=1167844 Score = 107 bits (118), Expect = 2e-17 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 19053 ATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCC-GTG 19111 ||||| || ||||| |||||||| ||||||| ||| || ||||| ||||| ||| Sbjct 316145 ATCGGTGGTACGGTCACGTGCGTCATCCGCAACGCTCCGTTCGGTCTCGGAGAGCCTGTG 316086 Query 19112 CTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGG 19171 || |||||| | || ||| | ||||||||||||||||||||||| || |||||||| Sbjct 316085 -TTCGACAAGCTGGAAGCCCTCTTGGCCCACGCCATGCTGTCGATCCCCGCAACCAAGGG 316027 Query 19172 ATTCGAGATTGGCAGCGGGTT 19192 ||||||||||| |||||| Sbjct 316026 TTTCGAGATTGGTTCCGGGTT 316006 Score = 87.8 bits (96), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| ||||| ||||||| ||| || | | || || || || | Sbjct 399245 TCGACGTCGTACGCAACCGCATCAAGGCTTTTGCCCAGAAAAAGGTCACACTCCCACCGG 399304 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 | ||||||||| | ||||||||||||| ||||||| | || ||| |||||||| | Sbjct 399305 GTCGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGAGCCCAGCAAG 399364 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | || || || ||||||| | ||||||| || ||||| ||| | ||||||||| Sbjct 399365 CGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACC 399424 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGCCAT 1574230 | | |||||||| | | || ||||| |||||||| Sbjct 399425 AGAGCAACAAAATCATCGAGCCGATTCAGAGTCGATGCGCCAT 399467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107125987586037