Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015975.1_202016-12- 23] 161 sequences; 29,508,937 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq85 210 3e-48 seq114 140 5e-27 seq80 86.0 1e-10 >seq85 Length=404085 Score = 210 bits (232), Expect = 3e-48 Identities = 202/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| |||| ||||||||||| || | |||||| || Sbjct 380822 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACACGGAGCATGGGGACGATGCCGTTCGAG 380881 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||| | ||| | ||||| | ||||| | || ||| Sbjct 380882 TAGCCGTTCGTGCCGGCGATGTAAGAGCCGGTCGCGCGGATGTTGTGGATGCTCAAACCG 380941 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||||||||| ||| Sbjct 380942 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCG 381001 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| |||||||| | ||| || |||||||| |||||| | | ||| ||| Sbjct 381002 ATCGAGTCGTCCTTCATGGTGACCAGGAAACACGACGAAAGCTGCGGGTGAGGCGTTCCG 381061 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || ||||||||||| |||| Sbjct 381062 GCGTTGAAGAGCGTCGGCG 381080 Score = 145 bits (160), Expect = 1e-28 Identities = 300/450 (67%), Gaps = 2/450 (0%) Strand=Plus/Plus Query 2071564 GGCGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTC 2071623 |||| ||| ||| || || ||||||||||| ||| | |||| | | ||||| |||||| Sbjct 380372 GGCGCCGAGTACTCGATGATCTCGGTGCACAAGTTCGACGACTTGATCGTGCCAAGGTTC 380431 Query 2071624 TGCTGGTT-GCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTC 2071682 | ||||| | | | | ||| |||||||||||| |||||| | || || || || Sbjct 380432 TTTTGGTTCGATTTTTTGTTTG-CGGCGTCCTTGTAGAGCATGAACGGGTTGCCGGTTTC 380490 Query 2071683 GATCTGCGCCGTGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCG 2071742 || ||| || | || || |||||| | ||||||| | || || | ||||| Sbjct 380491 GACCTGGGCTTCAAGAATCGCGTACCAAAGCTTTTGCGCGGGGATCGTCTTCTTGGCGCG 380550 Query 2071743 GCCCTNNNNNNNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAG 2071802 ||||| | | |||| || | |||| | | ||||| || Sbjct 380551 GCCCTCCTTTTCGTATTTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAG 380610 Query 2071803 GCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCAT 2071862 |||||| || || | ||||| ||||| | ||| |||| | | | | | || || ||| Sbjct 380611 GCCGGGGGCTTCAGCGGGGCAGAAGAGGGGCCACTCGCTGGCGGCCTCGACACGCTCCAT 380670 Query 2071863 AAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCC 2071922 |||||| ||| |||| || | | |||||||| || || ||| |||||||||||| Sbjct 380671 AAACAGATCGGGAATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACCTCCTCCTTGCC 380730 Query 2071923 GTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCA 2071982 ||||||||| ||||| || | |||| || ||| |||||||| ||||| |||||| Sbjct 380731 GTGGTTCTTGCGAAGGTCCAGGAACTCGAAGACGTCAGCGTGCCATGGCTCGAGGTAGAT 380790 Query 2071983 GGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 || ||||| || |||||| ||| || Sbjct 380791 CGCGAAGGCTCCGGGACGCTTGTTGCCACC 380820 Score = 105 bits (116), Expect = 1e-16 Identities = 173/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 ||||||||||| |||| ||| || |||| | || ||||||| ||||||||||| Sbjct 379211 TGGTCGACGGTGAACTTGATCGCACCAACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 379270 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| || || || ||| ||||| |||||||||||||| | | ||| ||| Sbjct 379271 GTCTTCAGTCCTCGCTTCCAGCCGTAGAAGTGCATCGACGTGA--GCTGTGCCATCGTCG 379328 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || ||| || ||||||||| || |||||||| ||| | || |||||| Sbjct 379329 GGCTCGACA-AGTGGATGTTGAGCGATTGCGACTGGTCGATGAAGGCGCCTCGATCGGCC 379387 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | || ||||| | | | ||| || | |||||| ||||||||| | | ||||||||| Sbjct 379388 GACAGATCGATAAT-AGTCTTTTGCGAGAGCTCCCAGACGGTCTTGTAGATGGCCTTGAG 379446 Query 2069487 AT 2069488 || Sbjct 379447 AT 379448 Score = 93.3 bits (102), Expect = 7e-13 Identities = 141/196 (72%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 2070051 CGCCGCATGGTAGATCGTCTCAAAGATGGTGCG-GTTGAGGCGACGCGCGCCGGCGCTCT 2070109 ||| || |||||||| ||||| ||||| ||| |||||| ||||| ||| | Sbjct 380071 CGCGGCGTGGTAGATGGTCTCGAAGATC-TGCTTGTTGAGCTTGCGCGCCTCGGGTGAAT 380129 Query 2070110 CCCACGGCAGGTCCATCATGGCA--AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | |||||| ||| | | || ||||||||||| || || ||||| |||| ||| || Sbjct 380130 CGAACGGCATCGCCAAC--GCCATGAACGCGTCGGCGAGACCTTGCACTCCGATGCCGAT 380187 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 || |||||||| | ||| |||| | | |||||| || || |||| ||||| |||||| Sbjct 380188 GGGGCGGTGGCGGAAGTTGGAGTTCTGCGCCTCGATGACGGGATAGTAGTTGACGTCGAT 380247 Query 2070228 CACGCGGTTGAGGTTG 2070243 | |||||| | |||| Sbjct 380248 GATGCGGTTCAAGTTG 380263 >seq114 Length=2116821 Score = 140 bits (154), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 1305430 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 1305371 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 1305370 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 1305314 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| ||||| Sbjct 1305313 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCG 1305254 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 1305253 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 1305207 Score = 140 bits (154), Expect = 5e-27 Identities = 168/227 (74%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || || | Sbjct 1407282 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACCG 1407223 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || ||| || | Sbjct 1407222 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGCTTGG 1407166 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| ||||||| |||| ||||||||||| |||||||| | |||| ||||| Sbjct 1407165 ACGCCTCGGTGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATCAGCATCG 1407106 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 1407105 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACCTTG 1407059 Score = 127 bits (140), Expect = 3e-23 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| ||| || | Sbjct 1714928 CCTTGGTGCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCG 1714987 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||| |||||||| || | ||| || ||||| |||| || ||| || | Sbjct 1714988 AGGTTTGGATCTCTCGCGACGAGATGGTCGACTTGCGGTTGTA---GCCCGCGAGTTTGG 1715044 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 ||||||||| |||| || |||| ||||||||||| |||||||| | ||| ||||| Sbjct 1715045 ATGCCTCGGTGGCGATACGCTCGAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 1715104 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||| ||| Sbjct 1715105 CCTTGTTCGAGATACCGGTGTCGGGGTGGACCTGCTTCAACACTTTG 1715151 Score = 116 bits (128), Expect = 6e-20 Identities = 147/199 (74%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 796150 GCCTCGG-GTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 ||||||| | ||| ||||||| ||| || || ||| |||||| || ||||| Sbjct 1949063 GCCTCGGCGGACT-GGACCTCACCAGAGAATCGCTCGACCAAGTTCTCGTTGACAATGCC 1949121 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||||||||||||||||||| ||| |||| ||||||||| |||| Sbjct 1949122 GTCGGAGGCGGCGAAAAAGGCGAGGACGTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAG 1949181 Query 796269 C---GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | | |||||| | | |||| | | ||| | ||| ||||||||||||||||| Sbjct 1949182 CTTGTTGTCCCAGTCGTGCATGTCCTTGGACAAGTCCATCTCTTCGGCGGTCCAAAAGGA 1949241 Query 796326 GGCCTCGGCCTTTTTGTAC 796344 ||||||||||| |||||| Sbjct 1949242 TGCCTCGGCCTTCTTGTAC 1949260 >seq80 Length=1167844 Score = 86.0 bits (94), Expect = 1e-10 Identities = 166/245 (68%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 2019195 CTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCG 2019254 || || || || ||||||||| | |||||||||| || ||||||| | || ||| Sbjct 399295 CTCCCACCGGGTCGCCACAAGCTCGTCATCCTCGACGAAGCCGACTCGATGACCCCGGGA 399354 Query 2019255 GCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTG 2019314 |||||||| || ||||| ||| ||||||| | | ||||||| || || || || | Sbjct 399355 GCCCAGCAAGCGCTCCGCAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTT 399414 Query 2019315 GCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGC 2019374 || |||||| | | ||||||| | | ||||| || |||||||||||| | Sbjct 399415 GCGTGCAACCAGAGCAACAAAATCATCGAGCCGATTCAGAGTCGATGCGCCATCTTGAGG 399474 Query 2019375 TTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTCTGCGCGAGATTATCGACGCCGAA 2019434 | || | || ||||| ||| || | |||| ||| |||||| ||| ||| Sbjct 399475 TACTCGAGGCTGACCGATGCCGAGTTGTTGAGGCGTTTGCTGGAGATTTGCGAAATTGAA 399534 Query 2019435 AAGGT 2019439 ||||| Sbjct 399535 AAGGT 399539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916229273695679