Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20saponariae_20[genbank_20GCA_5F900015975.1_202016-12- 23] 161 sequences; 29,508,937 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq80 152 5e-32 seq56 118 1e-21 seq105 114 1e-20 >seq80 Length=1167844 Score = 152 bits (168), Expect = 5e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || ||||| | ||||| |||||||| ||||||||| ||||| ||||||| | Sbjct 547231 CCGCCTCGGAGACGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 547172 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| ||||| || || || |||||||| | |||| Sbjct 547171 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGA 547112 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| | || || | ||| | | | ||||| ||||| || Sbjct 547111 ATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCAAC 547053 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || |||| ||||| ||||| || ||||| Sbjct 547052 CTCGAGCGTGATCGTCTTGCCTGTCAAGGTCTTGACGAAGATTTGCAT 547005 Score = 132 bits (146), Expect = 4e-26 Identities = 170/230 (74%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||||||||| || || | | Sbjct 789613 CCACCACGGAGACGCAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGCG 789554 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| ||||| |||| ||||| ||||| | |||| Sbjct 789553 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAATCGCTGCTGGTCTGGGGGA 789494 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||| | ||| | || | ||| || | || | ||||| ||||| Sbjct 789493 ATGCCTTCCTTGT-CTTGAATCTTGGTCTTGACATTGTCG--ATCGTGTCCGAGGACTCG 789437 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| | || ||||| || ||||| |||||||| ||||| || ||||| Sbjct 789436 ACCTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 789387 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| |||||||| ||||||||| ||||| || |||| | Sbjct 547003 CCACCTCGGAGGCGGAGCACCAAGTGCAGCGTCGACTCCTTCTGGATGTTGTAATCGGCG 546944 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || |||||||||||||| ||||| || || || |||||||| | |||| Sbjct 546943 AGCGTACGGCCATCCTCGAGCTGCTTGCCCGCGAAGATGAGACGTTGTTGGTCTGGGGGA 546884 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||| ||| ||| | || || | ||| | | | ||||| ||||| || Sbjct 546883 ATGCCCTCCTTATCC-TGAATCTTAGCCTTTACGTTGTCGATCGTGTCCGAGGACTCAAC 546825 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | ||| ||||| || || || | ||||| || || || ||||| Sbjct 546824 CTCAAGCGTGATCGTCTTGCCGGTTAAGGTCTTGACAAAGATTTGCAT 546777 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || ||||| ||||||||||||||| || || | | Sbjct 789385 CCACCACGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGCG 789326 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || || || || |||||||| | |||| Sbjct 789325 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGA 789266 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| || | | | ||||| ||||| || Sbjct 789265 ATACCCTCCTTGTCTTGGATCTTGGTCTT-GACATTGTCAATCGTGTCCGAGGACTCGAC 789207 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || ||||| || ||||| |||||||| ||||| || ||||| Sbjct 789206 CTCGAGGGTGATCGTCTTGCCCGTAAGCGTCTTGACGAAGATTTGCAT 789159 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | ||||| || ||||| ||||||||||||||| || || | | Sbjct 789157 CCACCGCGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGAATGTTGTAATCCGCG 789098 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || |||||||||||||| || || || || || |||||||| | |||| Sbjct 789097 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCAAAGATGAGACGTTGTTGGTCTGGGGGA 789038 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| || | | | ||||| ||||| || Sbjct 789037 ATACCCTCCTTGTCTTGGATCTTGGTCTT-GACATTGTCAATCGTGTCCGAGGACTCGAC 788979 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| || ||||| Sbjct 788978 CTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 788931 >seq56 Length=195491 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || || || |||||| || ||||| ||||||| Sbjct 107528 CCACCTCGGAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCGGCC 107469 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | |||||| | || |||||||||||||||||||| || || || || ||||| | ||| Sbjct 107468 AAGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 107409 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 107408 ATGCCTTCCTTGTCTTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCGGACGACTCGAC 107350 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || ||||| || ||||| ||||| || ||| || Sbjct 107349 CTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGCCTG 107301 >seq105 Length=561522 Score = 114 bits (126), Expect = 1e-20 Identities = 163/227 (72%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| || ||||| |||||| || ||||| || || | | Sbjct 279977 CCACCACGCAGGCGGAGCACCAAGTGGAGCGTCGACTCCTTTTGGATGTTGTAATCCGCG 280036 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || ||||||||||||||||| || || || || || ||||| | ||| Sbjct 280037 AGCGTGCGGCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCGGGGGGG 280096 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || ||||||||| ||| || ||| ||| | | | |||||| |||||| || Sbjct 280097 ATGCCTTCCTTGTCCTGGATCTTGGTCTT-GACGTTGTCGATCGTGTCGGACGACTCGAC 280155 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861 ||| | || || || || ||||| || ||||| ||||| || |||| Sbjct 280156 CTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCA 280202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303069613200