Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12-
23] 123 sequences; 24,532,870 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq36 91.5 2e-13
>seq36
Length=1210608
Score = 91.5 bits (100), Expect = 2e-13
Identities = 415/647 (64%), Gaps = 16/647 (2%)
Strand=Plus/Minus
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307
|||||| ||| | ||| || || | ||| || ||||| || ||||| || || | ||
Sbjct 5279 CCACTCGCCGGCGGCCTCGACACGCTCCATGAACAGATCGGGGATCCAGAGCGCAAAGAA 5220
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
||||| | | | ||| || || || |||||| ||| || |||||| | |
Sbjct 5219 GAGATCACGAGCGCGGACTTCTTCCTTGCCGTGATTCTTGCGAAGGTCCAGGAACTCGAA 5160
Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427
| || | |||||||| || | ||| || || | |||| || || ||||| || ||
Sbjct 5159 GACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACC 5100
Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487
|| || | ||| | |||||||| || || || | || ||| || | || || || ||
Sbjct 5099 TTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACGCGCAGCATGGGGACGATGCCATTCGA 5040
Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547
|| || || |||| ||| ||| || | || || || || || || |||
Sbjct 5039 GTAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTTAAACC 4980
Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA-CGTGTCATAGATGCCTT 63606
|| || || || | || ||||| | ||||| ||| || | |||||| ||||||||||
Sbjct 4979 GATACCACCGGCGGTCTTGGAGATGAGCGCGCA-CGTCTTGAGCGTGTCGTAGATGCCTT 4921
Query 63607 CTATGCTATCATCGATCAT-GTTAAGTAGAA-AACAGCTAGA-CATTTGGTGACGAGTAG 63663
| || || || |||| || | |||| || | ||| | ||||| | |||
Sbjct 4920 CAATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGAGGGGTA- 4862
Query 63664 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGT 63723
|| ||||| || | || || || ||||| || || | || || | || ||||
Sbjct 4861 --CCGGCATTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGGTTGT 4804
Query 63724 ACGTCT-CAATAGCTGAGTCTATATCCCATTGA---TGAATTCCTACTGCGACACGCATT 63779
| | || ||| | | || || || ||| || || || || |||||||||||
Sbjct 4803 AGGACTGCAAGA-CGCGCTCGATGTC---GTGACCGTGGATGCCGACGGCGACACGCATG 4748
Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839
| ||||||||| || | ||| | | ||| || || | ||||||||| ||
Sbjct 4747 AGCATGTGCTGCGGACGTTCGGCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCG 4688
Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAAT 63886
| || || || |||||||||||||| || || || ||||| ||
Sbjct 4687 AGTGTCTTGAAGCCAAAATAGTTGTAGCCGAAATCGCGGTCGTAGAT 4641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629816631655440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |