Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12-
23] 123 sequences; 24,532,870 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq21 168 1e-37
seq34 158 2e-34
>seq21
Length=1587489
Score = 168 bits (186), Expect = 1e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 1349506 CGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1349565
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || || |||| || |||| || | ||| | ||||||||||||
Sbjct 1349566 GTCAAGCGTATCTCCGGCCTGATCTACGAGGAGACCCGAGGTGTGCTCAAGATCTTCCTC 1349625
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| |||||||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 1349626 GAGAACGTTATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 1349685
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || | || || ||||| | | | || ||||| ||
Sbjct 1349686 TCGCTCGATGTCGTCTACGCCCTCAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 1349741
Score = 168 bits (186), Expect = 1e-37
Identities = 179/236 (76%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 1427588 CGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 1427529
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || || |||| || |||| || | ||| | ||||||||||||
Sbjct 1427528 GTCAAGCGTATCTCCGGCCTGATCTACGAGGAGACCCGAGGTGTGCTCAAGATCTTCCTC 1427469
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| |||||||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 1427468 GAGAACGTTATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 1427409
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | ||| ||||||| || | || || ||||| | | | || ||||| ||
Sbjct 1427408 TCGCTCGATGTCGTCTACGCCCTCAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 1427353
Score = 165 bits (182), Expect = 1e-36
Identities = 178/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 888959 CGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 888900
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || || |||| || |||| || | ||| | ||||||||||||
Sbjct 888899 GTCAAGCGTATCTCCGGCCTGATCTACGAGGAGACCCGAGGTGTGCTCAAGATCTTCCTC 888840
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| |||||||| ||| | || ||| ||||||||||| || || ||||| ||||||
Sbjct 888839 GAGAACGTTATCCGTGACTCGGTCACCTACACCGAGCACGCCAAGCGCAAGACCGTCACC 888780
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692
|| | || ||||||| || | || || ||||| | | | || ||||| ||
Sbjct 888779 TCGCTCGACGTCGTCTACGCCCTCAAGCGATCCGGCCGAACGCTCTACGGTTTCGG 888724
>seq34
Length=2298476
Score = 158 bits (174), Expect = 2e-34
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 475297 CGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 475238
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || || |||| ||||||| || | ||| | ||||||||||||
Sbjct 475237 GTCAAGCGTATCTCCGGCCTGATCTACGAAGAGACGCGAGGTGTCCTTAAGATCTTCCTC 475178
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||| ||||| || || ||||| ||||||
Sbjct 475177 GAGAACGTGATCCGTGACTCGGTCACCTACACCGAACACGCCAAGCGCAAGACCGTCACC 475118
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || ||||||| ||
Sbjct 475117 TCGCTCGACGTCGTCTACGC 475098
Score = 158 bits (174), Expect = 2e-34
Identities = 155/200 (78%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| || |||||||| || ||||||||||| || ||||| ||||| || |||||||||||
Sbjct 518326 CGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGCCGTCTCGCACGTCGTGGTGGT 518385
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
||||||||| |||| || || |||| ||||||| || | ||| | ||||||||||||
Sbjct 518386 GTCAAGCGTATCTCCGGCCTGATCTACGAAGAGACGCGAGGTGTCCTTAAGATCTTCCTC 518445
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| |||| ||| | || ||| ||||| ||||| || || ||||| ||||||
Sbjct 518446 GAGAACGTGATCCGTGACTCGGTCACCTACACCGAACACGCCAAGCGCAAGACCGTCACC 518505
Query 16637 TCCATGGATATCGTCTATGC 16656
|| | || ||||||| ||
Sbjct 518506 TCGCTCGACGTCGTCTACGC 518525
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79075087540239
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |