Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12- 23] 123 sequences; 24,532,870 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq36 114 3e-20 seq21 107 4e-18 seq30 100 6e-16 >seq36 Length=1210608 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 280170 GGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAG 280229 ||| || | || ||||| ||||| ||||| || || || ||||| || |||| |||||| Sbjct 948375 GGTATCGTCGGCCCCAACGGTGCCGGTAAATCGACGCTGATCAAGCTCTTGACGGGCGAG 948434 Query 280230 ACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 ||| | || || || || |||||| |||||| |||| | || |||||||| Sbjct 948435 ACCGTGCCCGACGAAGGCAAGGTCGAGAAGCACCCCAACTTGCGTGTTGCGTACGTCGCC 948494 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAG 280349 || ||||| ||||||||||||||| | ||||| || | ||| | | || ||||| ||| Sbjct 948495 CAACACGCGTTCCACCACATCGAGGAGCACCTCGAGAAGACGGCGATGCAGTACATCCAG 948554 Query 280350 TGGCGCTA 280357 ||||| || Sbjct 948555 TGGCGTTA 948562 >seq21 Length=1587489 Score = 107 bits (118), Expect = 4e-18 Identities = 197/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCA---CGCTGGCAACCGCTGGTCTT 217893 ||||| |||||| |||| || ||||| || ||||| |||| || | ||||| Sbjct 552830 TGCACGCTCATCTTGACCGAAGGAGATTC---TGCCAAAGCGCTCGCCGTGTCCGGTCTG 552886 Query 217894 GCCGTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTG 217953 ||||| || ||||| || | |||||| |||| ||| | || || ||| ||||||||||| Sbjct 552887 GCCGTCGTCGGTCGAGACAACTATGGTGTCTTTCCCTTGCGAGGAAAGTTGCTCAACGTG 552946 Query 217954 CGCGATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAA 218011 || || || ||| ||| || ||||| | ||||| |||||| || |||||||| | Sbjct 552947 CGTGAAGCGGCGG--GCAAGGCCTTGCTCGACAATGCCGAGATTCAAGCGATCAAGCAGA 553004 Query 218012 TCCTGGGTCTTCAGGTTGGAAAGACTTACAAGGATG-CGTCATCTCTGCGTTATGGCTCT 218070 || ||||||| ||| || || ||||| || | || | || || ||||| ||| Sbjct 553005 TCTTGGGTCTGCAGCAGGGCAAAGTTTACACCGACGTCGAC-TCGCTCCGTTACGGCAAG 553063 Query 218071 GTCATGCTTATGACTGATGCTGATGTTGACGGGTCCCACAT 218111 ||||| | ||| | ||| ||| || || |||||||| Sbjct 553064 CTCATGATCATGGCCGATCAGGATCACGATGGATCCCACAT 553104 Score = 95.1 bits (104), Expect = 2e-14 Identities = 270/414 (65%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 || ||||| |||||||| | || || |||||| | || | |||||| || || Sbjct 553514 GATTTCATTAACAAGGAGTTGATCCTCTTCTCGATGGCCGACAACGTGCGTTCGATCCCT 553573 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 ||| | ||||| | || || || || ||| || | || | |||||||| Sbjct 553574 TCCGTCATTGATGGTTTTAAACCGGGTCAACGCAAGGTCTTGTTCGGTTGCTTCAAGCGC 553633 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 || || || || || ||||||| || || |||||||| |||| || | Sbjct 553634 AAGTTGACGCAGGAGATCAAGGTCGGACAATTGGGCGGTTATGTCGCCGAGCACTCGGCG 553693 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||||||||| || |||| |||| ||| |||| | ||| ||||||| | | || Sbjct 553694 TACCATCACGGCGATTTGAGTTTGCAAGGTACCATCATCGGCTTGGCACAACAGTTCGTT 553753 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 || |||||| | ||| | || |||||||||||| |||||| | ||||| ||| Sbjct 553754 GGGTCCAACAACCTCAACATCCTCGACCCCAACGGTCAATTTGGTACGCGTCTGCAAGGT 553813 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTGACGCGCCAG 218877 || || || || || || | || ||||| || || | ||| || | || || | Sbjct 553814 GGCAAAGACGCGGCCTCGGCTCGTTACATCTTCACGAACGTCTCGGCCATCACCCGTAAT 553873 Query 218878 GTGTTCAATCAGGCCGATG---ATGTGCTCCTTAAGTATCTTGAGGACGATGGT 218928 || ||| | | ||||||| |||||||| |||| || | ||||||||| Sbjct 553874 GTCTTCCACCCCGCCGATGACAATGTGCTC---GAGTACCTCAACGACGATGGT 553924 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 685717 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 685658 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 685657 CCCGCATCGGGC 685646 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||| ||||||||||||||||||||| | ||||||||||| || |||| |||||||||| Sbjct 728624 GCCTGGTTAGCTCAGTCGGTAGAGCACCTGACTCTTAATCAGGTTGTCGCGGGTTCGAGC 728565 Query 142564 CCCACATCGGGC 142575 ||| |||||||| Sbjct 728564 CCCGCATCGGGC 728553 >seq30 Length=1404868 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || || ||||| | Sbjct 1001175 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCGATTCTGTTCGAG 1001234 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| |||| || ||||| || |||||| ||||| |||||| |||||| Sbjct 1001235 GCCGATATCCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 1001294 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 1001295 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 1001354 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 1001355 GGCTTCCT 1001362 Score = 100 bits (110), Expect = 6e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGT 279758 || || ||||| ||||| |||||||||||||| || | | || || ||||| | Sbjct 1007728 GGCTCGCTGTCCGGTGGATGGAAGATGAAGCTCGCGTTGGCGCGTGCGATTCTGTTCGAG 1007669 Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 |||||| |||| |||| || ||||| || |||||| ||||| |||||| |||||| Sbjct 1007668 GCCGATATCCTCTTGCTCGACGAGCCGACGAACCACTTGGACGTGCTCAACGTCGCCTGG 1007609 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | |||||| || |||| || | ||| |||| ||||| |||||||| Sbjct 1007608 CTCGAGAACTACCTCACGTCGCTGACGACGTGCACGTCCATCATCGTCTCGCACGACTCG 1007549 Query 279879 GGCTTCCT 279886 |||||||| Sbjct 1007548 GGCTTCCT 1007541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835180193443