Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12- 23] 123 sequences; 24,532,870 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq36 365 8e-96 >seq36 Length=1210608 Score = 365 bits (404), Expect = 8e-96 Identities = 873/1298 (67%), Gaps = 38/1298 (3%) Strand=Plus/Minus Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GCC 244449 |||| ||||||| ||||||||||||||||||| |||||| | | ||| |||| | | Sbjct 5854 TCGATCGCGGCGTGGTAGATGGTCTCGAAGATCTGCTTGTTGAGCTTGCGCGCCTCAGGC 5795 Query 244450 GCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCC 244509 | | ||| || || ||| |||||| | ||||| || || ||||| |||||||| Sbjct 5794 GAATC-GAACGGCATCGCCAAGGCCATGAACGCATCGGCGAGACCTTGCACTCCGATGCC 5736 Query 244510 GATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTC 244569 |||||| | ||| || |||||| || ||| |||||||| ||||| |||| Sbjct 5735 GATGGGGCGGTGGCGGAAGTTGGAATTTTGCGCCTCGATGACGGGGTAGTAGTTGACGTC 5676 Query 244570 GATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTC 244629 ||| | ||| | ||| | | | |||||| ||| |||| | ||||| Sbjct 5675 GATGATGCGGTTCAAGTTAAACGCAACGACCTTGACGACCTCGTGCAGCTTTTTGAAGTC 5616 Query 244630 GTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGC 244689 |||| || | | || || ||| ||| ||| || | ||| || Sbjct 5615 GTACACGCCG---TTCT------TGATGAAGCTCGGCAACGCGAT-----CGAAGC---- 5574 Query 244690 CAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTT 244749 || ||||||||| || ||| || | | ||||| || ||||||||||| ||||| Sbjct 5573 CAAGTTGCAGACAGCGCACTCGTCGGGAGCCGAGTACTCGATGATCTCGGTGCACAGGTT 5514 Query 244750 ACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTA 244809 | ||||| ||||| |||| || || || ||||| ||| |||||||||||| Sbjct 5513 CGACGATTTGATCGTGCCGAGGTTCTTTTGGTTCGACTTTTTGTTCGCGGCGTCCTTGTA 5454 Query 244810 GAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGGTCCC 244868 |||||||||||| |||||||||| |||||| |||||| ||| || ||| || | Sbjct 5453 GAGCATGAAGGGGTTGCCGGTCTCGACCTGGGCCTCGAGGATCGC-GTACCAAAGCTTTT 5395 Query 244869 TAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGA 244928 || || ||| | || ||||| ||||| | ||||| | || Sbjct 5394 GCGCGGGGATGGTCTTCTTGGCGCGACCCTCCTTTTCGTACTTCTCGAACAGGACGCGGA 5335 Query 244929 ACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACT 244988 |||| ||| |||| |||| ||||||||| | || ||||| | ||| ||||| Sbjct 5334 ACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCCTCGGCGGGGCAGAAGAGGGGCCACT 5275 Query 244989 CGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGT 245048 ||||| || ||| ||| | || |||||| || |||||||||||||| || |||||| | Sbjct 5274 CGCCGGCGGCCTCGACACGCTCCATGAACAGATCGGGGATCCAGAGCGCAAAGAAGAGAT 5215 Query 245049 CCCTGGTCCTCTGCTCGTCCGAGCCAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACG 245107 | | | | || ||| ||| ||| ||||| | || |||| || || |||||| Sbjct 5214 CACGAGCGCGGACTTCTTCCTTGCC-GTGATTCTTGCGAAGGTCCAGGAACTCGAAGACG 5156 Query 245108 TCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGG 245167 ||| ||||||| ||||| | ||||| |||| ||| ||||| ||||||||||| || ||| Sbjct 5155 TCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGG 5096 Query 245168 TCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGG 245227 || || | | || |||| ||| |||||| | || || ||||| || |||| | Sbjct 5095 TCGACGTAGCGCGCGGTGTTGTTGTAGACGCGCAGCATGGGGACGATGCCATTCGAGTAG 5036 Query 245228 CCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGT 245287 ||||| ||||| |||||||| ||| | | | || |||| |||| | || | Sbjct 5035 CCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTTAAACCGATA 4976 Query 245288 CCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATG 245347 || |||||| |||||||||||| ||||| |||||| ||||| ||||| || || Sbjct 4975 CCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCAATC 4916 Query 245348 CTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAG 245407 ||| |||||| ||| || ||||| || || ||||| || | ||| | | | Sbjct 4915 GAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGAGGGGTACCGGCA 4856 Query 245408 TTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTC-GAGAGGAACCCGTACGTCTG 245466 ||||| || || || ||||||||| ||||||| |||| || | || ||| | ||| Sbjct 4855 TTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGC-GCTCGGACATGAGGTTGTAGGACTG 4797 Query 245467 GAGCAGA-GCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGC 245524 | ||| ||| ||||||| || |||||||| | |||| | |||||| ||||| Sbjct 4796 CA--AGACGCGCTCGATGTCGTGACCGTGGATGCCGACGGCGACACGCATGAGCATGTGC 4739 Query 245525 TG-GGGCGTCTCGATGGGTCCCTCGGGTCCCT--TGAGCATGTAGGAGCGCTCGAGCGTC 245581 || || ||| ||| | | || | ||| | |||| ||||||||||||||| ||| Sbjct 4738 TGCGGACGT-TCG--GCGACCTTGCCGTCGATGCGAAGCAAGTAGGAGCGCTCGAGTGTC 4682 Query 245582 TTGAACCCAAAGTACGAGTAGCCAAAGTCGGCGTGGTGCCTGACGGCTGCGTCGAGTCTC 245641 ||||| ||||| || |||||| || ||| || || ||||||| || ||| | Sbjct 4681 TTGAAGCCAAAATAGTTGTAGCCGAAATCGCGGTCGTAGATGACGGCGCTGTTGAGGCGG 4622 Query 245642 TCGGCG-TGCTTCTGACTGACCTCGTAAAACTTTTGCG 245678 |||||| || ||| |||||||||| || ||||| Sbjct 4621 TCGGCGTTGGCCATGA-TGACCTCGTACGTCTCTTGCG 4585 Score = 140 bits (154), Expect = 6e-28 Identities = 189/260 (73%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 42744 GGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTC 42803 ||| | ||||| |||||||||||||||||| || | | |||||||||| | |||||| Sbjct 55769 GGCTCGTTCGCTTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGATTGACCTTC 55710 Query 42804 TCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| ||||| | |||||||| || || | ||||||||||||||| ||||| Sbjct 55709 TCCAACGAGCTCATTTCGCGTGACGAGGGCCTCCACACCGACTTTGCCTGCCTCTTGTTC 55650 Query 42864 TCGAGCCACCTCAGGCACAAGCCCTC-GAAGGAGCGGGTCCGGGCCATCATCACGGAGGC 42922 || ||||||| || ||| || | || || | |||||||| |||||| Sbjct 55649 TC---CCACCTCGAGC-GAAGACCGCACCCCGACACCGTTGCGCTCATCATCAAGGAGGC 55594 Query 42923 CGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA 42982 ||| |||||||||||||||||| | || || | || ||| || |||||||||| Sbjct 55593 CGTCGAGATCGAGAAGGAGTTCTTGACCAAGGCTCTTCCCTGCGGTTTGATCGGCATGAA 55534 Query 42983 CCACGACCTCATGTGCAAGT 43002 | | | ||||||||| ||| Sbjct 55533 CGCCAAGCTCATGTGCCAGT 55514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337748078480