Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12-
23] 123 sequences; 24,532,870 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq79 116 3e-21
seq31 96.9 3e-15
seq21 87.8 2e-12
>seq79
Length=1842920
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || ||||| | | ||| | |||| ||| || ||||| |||||||| || ||| |
Sbjct 679345 CCACCACGGAGACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATATTGTAGTCGGCG 679286
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| || | || || || ||| | |||||||| |||||||| || ||
Sbjct 679285 AGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAGGG 679226
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || || || ||||| || |||| || | || | ||||| || ||||||||
Sbjct 679225 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCGAC 679167
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||||| || | |||||||||||| || || || ||||| ||||||||
Sbjct 679166 CTCGAGCGTGATCGTTTTGCCGGTCAGGGTCTTGACAAAGATTTGCAT 679119
Score = 113 bits (124), Expect = 4e-20
Identities = 165/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | ||| | |||| ||| || ||||| ||||| || || |||
Sbjct 679120 ATACCACCGCGGAGACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCG 679061
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || ||| || | || || || ||| | |||||||| |||||||| ||
Sbjct 679060 GCGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGA 679001
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||| || || || || || || |||| || | || | ||||| || |||||
Sbjct 679000 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTC 678942
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
||| ||||| || | |||||||||||| || || || || || ||||||||
Sbjct 678941 GACCTCGAGCGTGATCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 678891
Score = 105 bits (116), Expect = 6e-18
Identities = 163/229 (71%), Gaps = 3/229 (1%)
Strand=Plus/Minus
Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172
||| || ||||| | | ||| | || ||||| || ||||| ||||| ||||| |||
Sbjct 453052 TCCGCCACGGAGACGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTATAGTCGGC 452993
Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232
|| || ||| || | || || || ||| | |||||||| |||||||| || ||
Sbjct 452992 GAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGGGG 452933
Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291
| |||| || || || ||||| || |||| || | || | ||||| || ||||| |
Sbjct 452932 A-TGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGACGACTCAA 452875
Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| ||||| || | |||||||||||| || || || || || ||||||||
Sbjct 452874 CCTCGAGCGTGATCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 452826
Score = 100 bits (110), Expect = 3e-16
Identities = 163/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | ||| | |||| ||| || ||||| ||||| || || |||
Sbjct 451916 ATACCACCGCGGAGACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCG 451857
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || ||| || | || || || ||| | |||||||| |||||||| ||
Sbjct 451856 GCGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGG 451797
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| ||||| || || || || || || || | || | || | ||||| || |||||
Sbjct 451796 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTC 451738
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || | |||||||||||| || || || || || |||||||||
Sbjct 451737 AACCTCGAGCGTGATCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCATC 451686
Score = 98.7 bits (108), Expect = 9e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | ||| | |||| ||| || ||||| ||||| || || |||
Sbjct 452372 ATACCACCGCGGAGACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCG 452313
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || ||| || | || || || ||| | |||||||| |||||||| ||
Sbjct 452312 GCGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGG 452253
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| ||||| || || || || || || || | || | || | ||||| || |||||
Sbjct 452252 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTC 452194
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | |||||||||||| || || || || || ||||||||
Sbjct 452193 AACCTCGAGCGTGATCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 452143
Score = 95.1 bits (104), Expect = 1e-14
Identities = 162/231 (70%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || |||||||| | | ||| | |||| ||| || ||||| ||||| || || |||
Sbjct 452599 ATACCACCGCGGAGACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCG 452540
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
|| || ||| || | || || || ||| | |||||||| |||||||| ||
Sbjct 452539 GCGAGCGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGG 452480
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||| |||| || || || || || || || | || | || | ||||| || |||||
Sbjct 452479 GGA-TGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATCGTGTCCGACGACTC 452422
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | |||||||||||| || || || || || ||||||||
Sbjct 452421 AACCTCGAGCGTGATCGTTTTGCCGGTCAGGGTCTTGACGAAGATTTGCAT 452371
>seq31
Length=897251
Score = 96.9 bits (106), Expect = 3e-15
Identities = 144/202 (71%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197
|| || || || ||||||||||| || || || || || ||| || | ||
Sbjct 114211 TGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCGAGAGTGCGGCCATCCTCGAGCTGC 114152
Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257
|| || ||| | || | ||||||||||| ||||| |||||||| || ||||| || ||
Sbjct 114151 TTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCGGGATGCCTTCCTTGTCTTGGATCTTG 114092
Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316
|||| || | || | |||||||| |||||||| ||||| || | ||| ||||| ||
Sbjct 114091 GCCTTGA-CGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGT 114033
Query 45317 TAGAGTTTTTACAAAAATTTGC 45338
||||| || || || ||||||
Sbjct 114032 AAGAGTCTTGACGAAGATTTGC 114011
>seq21
Length=1587489
Score = 87.8 bits (96), Expect = 2e-12
Identities = 157/227 (69%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| ||||| || | | ||| | || || || || ||||||||||| || || || |
Sbjct 1354139 CCACCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGCG 1354198
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || ||| || | || || || ||| | || | ||||||||||| || |||
Sbjct 1354199 AGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGA 1354258
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
|| ||||| || ||||| || || |||| || | || | |||||||| ||||||||
Sbjct 1354259 ATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGAGGACTCGAC 1354317
Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339
||||| || | || ||||| || || || || || || |||||||
Sbjct 1354318 CTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATTTGCA 1354364
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452002505045080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |