Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12- 23] 123 sequences; 24,532,870 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq36 116 4e-21 seq21 98.7 1e-15 >seq36 Length=1210608 Score = 116 bits (128), Expect = 4e-21 Identities = 422/653 (65%), Gaps = 7/653 (1%) Strand=Plus/Minus Query 110379 GTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438 |||||| || ||||| || ||| || ||||| ||||||||| | ||| | || || Sbjct 5492 GTTCTTTTGGTTCGACTTTTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGT 5433 Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAG 110497 || ||| | || ||| || || | ||| | | | ||| |||||| || || | Sbjct 5432 CTCGACCTGGGCCTCGAGGATCGCGTACCAAAGCTTTTGCG-CGGGGATGGTCTTCTTGG 5374 Query 110498 CGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAG 110557 || |||| |||| |||||||| | ||| | | || || | ||||| || || Sbjct 5373 CGCGACCCTCCTTTTCGTACTTCTCGAACAGGACGCGGAACTCTTCGCCGTAGACTTCGT 5314 Query 110558 AAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCT 110617 || || |||| | |||| |||||||||| ||| | || | |||| || | || Sbjct 5313 GGAGGCCGGGGGCCTCGGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCT 5254 Query 110618 TCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCAT 110677 ||||||||| || || ||||| | ||| |||| || ||||| || | ||||| | Sbjct 5253 CCATGAACAGATCGGGGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCTTCCT 5194 Query 110678 CACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGAT 110737 || || || ||| || |||| || || | || || | |||||| || ||||| | Sbjct 5193 TGCCGTGATTCTTGCGAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGT 5134 Query 110738 AGACAGCGATGGATCCCTTACGACGAC--CCGCCT-GGTTAACATAGCGTGCTGTGGCAT 110794 ||| |||| || ||| ||| || ||| ||| || ||||| || ||| | Sbjct 5133 AGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGT 5074 Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854 || |||| | ||||| || | || |||| || | || || || || || || Sbjct 5073 TGTAGACGCGCAGCATGGGGACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTAGG 5014 Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914 | | || || |||| |||||| | ||| |||||||| || ||| || Sbjct 5013 AGCCGGTCGCGCGGATGTTGTGGATGCTTAAACCGATACCACCGGCGGTCTTGGAGATGA 4954 Query 110915 GTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973 | || ||| ||| |||| || | || || || |||||||| || |||| | | | Sbjct 4953 GCGCGCACGTCT-TGAGCGTGTCGTAGATGCCTTCAATCGAGTCGTCCTTCATCGTGACC 4895 Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 | ||||| || || | ||| || |||| || || ||||||||||| || || Sbjct 4894 AAGAAGCACGACGAGAGCTGCGGGTGAGGGGTACCGGCATTGAAGAGCGTCGG 4842 >seq21 Length=1587489 Score = 98.7 bits (108), Expect = 1e-15 Identities = 272/407 (67%), Gaps = 14/407 (3%) Strand=Plus/Minus Query 168227 AGTAATGAATCATATTGAGAATGAGACCCTTGATATGGCTTCCATCATTATCTGCGTCTG 168286 |||||| | | ||||| || | ||||||||| ||| |||||| | ||| || | Sbjct 553136 AGTAATCGAGGAAATTGATGATCAAACCCTTGATGTGGGATCCATCGTGATCCTGATCGG 553077 Query 168287 TCATGATCATGAGACGACCATAACGAAGTTCGGAAACATCTTTGTACTCCTTTCCTTGTT 168346 |||||||||||| || ||||| || | || || |||| | || || || | Sbjct 553076 CCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCT 553017 Query 168347 GAAGTCCCAAAATTTTCTTGAGATCATTGAA-CTCCTGATTAGATGTCAA--CTGTGCCA 168403 | || ||||| || | ||||| | ||||| ||| ||| ||| | |||| Sbjct 553016 GCAGACCCAAGATCTGCTTGATCGC-TTGAATCTCGGCATTGTCGAGCAAGGCCTTGCC- 552959 Query 168404 CCGATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCCCATAATGATCTC 168463 || | || | |||||| |||| || || | ||||| || ||||| | |||| Sbjct 552958 -CGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAGGGAAAGACACCATAGTTGTCTC 552900 Query 168464 TACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGA 168523 ||| ||||||| ||||| | || ||||| | ||| || ||||| || || |||| || Sbjct 552899 GACCGACGACGGCCAGACCGGACACGGCGAGCGCTTTGGCAGAATCTCCTTCGGTCAAGA 552840 Query 168524 TGAGTGTACACTTTCCAGACT-GTGCC--GTACCAGCTTTGTTCGCATCGTCCAATTTGG 168580 |||| || ||||| ||| || || || ||||| ||||||||||| || | ||| Sbjct 552839 TGAGCGTGCACTTG---GACCCGTTCCTCGTTCCAGCGTTGTTCGCATCCTCGAGCTTGA 552783 Query 168581 GGATACCAGTGATCTTAGA-CTTTCGAGCTCCATCAGTCTTTTTGAG 168626 |||||| | || || | || | | |||||| ||||||||||| Sbjct 552782 CGATACCCGAAATACGCGATCGTTTGTG-TCCATCCGTCTTTTTGAG 552737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975094449400