Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12-
23] 123 sequences; 24,532,870 total letters
Query= NC_014767.1
Length=184095
Score E
Sequences producing significant alignments: (Bits) Value
seq36 116 4e-21
seq21 98.7 1e-15
>seq36
Length=1210608
Score = 116 bits (128), Expect = 4e-21
Identities = 422/653 (65%), Gaps = 7/653 (1%)
Strand=Plus/Minus
Query 110379 GTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGT 110438
|||||| || ||||| || ||| || ||||| ||||||||| | ||| | || ||
Sbjct 5492 GTTCTTTTGGTTCGACTTTTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGT 5433
Query 110439 TTCCGTCTGTGACTTGAGAATGGCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAG 110497
|| ||| | || ||| || || | ||| | | | ||| |||||| || || |
Sbjct 5432 CTCGACCTGGGCCTCGAGGATCGCGTACCAAAGCTTTTGCG-CGGGGATGGTCTTCTTGG 5374
Query 110498 CGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAG 110557
|| |||| |||| |||||||| | ||| | | || || | ||||| || ||
Sbjct 5373 CGCGACCCTCCTTTTCGTACTTCTCGAACAGGACGCGGAACTCTTCGCCGTAGACTTCGT 5314
Query 110558 AAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCT 110617
|| || |||| | |||| |||||||||| ||| | || | |||| || | ||
Sbjct 5313 GGAGGCCGGGGGCCTCGGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCT 5254
Query 110618 TCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCAT 110677
||||||||| || || ||||| | ||| |||| || ||||| || | ||||| |
Sbjct 5253 CCATGAACAGATCGGGGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCTTCCT 5194
Query 110678 CACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGAT 110737
|| || || ||| || |||| || || | || || | |||||| || ||||| |
Sbjct 5193 TGCCGTGATTCTTGCGAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGT 5134
Query 110738 AGACAGCGATGGATCCCTTACGACGAC--CCGCCT-GGTTAACATAGCGTGCTGTGGCAT 110794
||| |||| || ||| ||| || ||| ||| || ||||| || ||| |
Sbjct 5133 AGATCGCGAAGGCTCCGGGACGCTTGTTGCCACCTTGGTCGACGTAGCGCGCGGTGTTGT 5074
Query 110795 TGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGG 110854
|| |||| | ||||| || | || |||| || | || || || || || ||
Sbjct 5073 TGTAGACGCGCAGCATGGGGACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTAGG 5014
Query 110855 ACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTT 110914
| | || || |||| |||||| | ||| |||||||| || ||| ||
Sbjct 5013 AGCCGGTCGCGCGGATGTTGTGGATGCTTAAACCGATACCACCGGCGGTCTTGGAGATGA 4954
Query 110915 GTGCACAC-TCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATT 110973
| || ||| ||| |||| || | || || || |||||||| || |||| | | |
Sbjct 4953 GCGCGCACGTCT-TGAGCGTGTCGTAGATGCCTTCAATCGAGTCGTCCTTCATCGTGACC 4895
Query 110974 AGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGG 111026
| ||||| || || | ||| || |||| || || ||||||||||| || ||
Sbjct 4894 AAGAAGCACGACGAGAGCTGCGGGTGAGGGGTACCGGCATTGAAGAGCGTCGG 4842
>seq21
Length=1587489
Score = 98.7 bits (108), Expect = 1e-15
Identities = 272/407 (67%), Gaps = 14/407 (3%)
Strand=Plus/Minus
Query 168227 AGTAATGAATCATATTGAGAATGAGACCCTTGATATGGCTTCCATCATTATCTGCGTCTG 168286
|||||| | | ||||| || | ||||||||| ||| |||||| | ||| || |
Sbjct 553136 AGTAATCGAGGAAATTGATGATCAAACCCTTGATGTGGGATCCATCGTGATCCTGATCGG 553077
Query 168287 TCATGATCATGAGACGACCATAACGAAGTTCGGAAACATCTTTGTACTCCTTTCCTTGTT 168346
|||||||||||| || ||||| || | || || |||| | || || || |
Sbjct 553076 CCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCGGTGTAAACTTTGCCCTGCT 553017
Query 168347 GAAGTCCCAAAATTTTCTTGAGATCATTGAA-CTCCTGATTAGATGTCAA--CTGTGCCA 168403
| || ||||| || | ||||| | ||||| ||| ||| ||| | ||||
Sbjct 553016 GCAGACCCAAGATCTGCTTGATCGC-TTGAATCTCGGCATTGTCGAGCAAGGCCTTGCC- 552959
Query 168404 CCGATGAGTCCCTCACGTTTTTACACTTACCACGGAGTGGAAATACCCCATAATGATCTC 168463
|| | || | |||||| |||| || || | ||||| || ||||| | ||||
Sbjct 552958 -CGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAGGGAAAGACACCATAGTTGTCTC 552900
Query 168464 TACCCACGACGGAGAGACCAGCGACAGCGAGAGTTTTCGCTGAATCACCCTCTGTCACGA 168523
||| ||||||| ||||| | || ||||| | ||| || ||||| || || |||| ||
Sbjct 552899 GACCGACGACGGCCAGACCGGACACGGCGAGCGCTTTGGCAGAATCTCCTTCGGTCAAGA 552840
Query 168524 TGAGTGTACACTTTCCAGACT-GTGCC--GTACCAGCTTTGTTCGCATCGTCCAATTTGG 168580
|||| || ||||| ||| || || || ||||| ||||||||||| || | |||
Sbjct 552839 TGAGCGTGCACTTG---GACCCGTTCCTCGTTCCAGCGTTGTTCGCATCCTCGAGCTTGA 552783
Query 168581 GGATACCAGTGATCTTAGA-CTTTCGAGCTCCATCAGTCTTTTTGAG 168626
|||||| | || || | || | | |||||| |||||||||||
Sbjct 552782 CGATACCCGAAATACGCGATCGTTTGTG-TCCATCCGTCTTTTTGAG 552737
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 588975094449400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |