Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12- 23] 123 sequences; 24,532,870 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq36 206 4e-47 seq97 122 1e-21 seq21 116 6e-20 seq79 86.0 1e-10 >seq36 Length=1210608 Score = 206 bits (228), Expect = 4e-47 Identities = 201/259 (78%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 |||||||| |||||||| |||| ||| ||||||| |||||||| || | ||| || || Sbjct 5098 TGGTCGACGTAGCGCGCGGTGTTGTTGTAGACGCGCAGCATGGGGACGATGCCATTCGAG 5039 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||||| ||| | ||||| | ||||| | || ||| Sbjct 5038 TAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTCGCGCGGATGTTGTGGATGCTTAAACCG 4979 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || || ||||| | ||||||||||||||||||| | || ||||| ||||||||||| || Sbjct 4978 ATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGCCTTCA 4919 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| ||||||| | || |||||||||||| |||||| | | || ||| Sbjct 4918 ATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGAGGGGTACCG 4859 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 |||||||||||||| |||| Sbjct 4858 GCATTGAAGAGCGTCGGCG 4840 Score = 159 bits (176), Expect = 5e-33 Identities = 295/439 (67%), Gaps = 0/439 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || ||||||||||||||| | ||| | | ||||| ||||||| ||||| Sbjct 5538 ACTCGATGATCTCGGTGCACAGGTTCGACGATTTGATCGTGCCGAGGTTCTTTTGGTTCG 5479 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | ||| |||||||||||| |||||| |||| || ||||||| ||| ||| Sbjct 5478 ACTTTTTGTTCGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGACCTGGGCCT 5419 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCCTNNNNNN 2071753 || ||| || |||||| | ||||||| | | || | ||||| |||| Sbjct 5418 CGAGGATCGCGTACCAAAGCTTTTGCGCGGGGATGGTCTTCTTGGCGCGACCCTCCTTTT 5359 Query 2071754 NNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCT 2071813 | ||| || || | |||||| | ||||| |||||||| |||| Sbjct 5358 CGTACTTCTCGAACAGGACGCGGAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCCT 5299 Query 2071814 CGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCGC 2071873 ||| ||||| ||||| | ||| |||||| | | | | || || ||| ||||| ||| Sbjct 5298 CGGCGGGGCAGAAGAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAACAGATCGG 5239 Query 2071874 ACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTT 2071933 |||| || | | |||||||| || || ||| || ||||||||||| ||||| Sbjct 5238 GGATCCAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCTTCCTTGCCGTGATTCTTGC 5179 Query 2071934 TCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGC 2071993 ||||| || | |||| || |||||||||||||||||| |||||| || ||||| | Sbjct 5178 GAAGGTCCAGGAACTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTC 5119 Query 2071994 CCTTGCGCTTGCCGCCGCC 2072012 | |||||| ||| || Sbjct 5118 CGGGACGCTTGTTGCCACC 5100 Score = 105 bits (116), Expect = 1e-16 Identities = 127/172 (74%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 796176 GAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGAC 796235 ||| || || ||| |||||| |||||||||||| |||||||| ||||||||||| Sbjct 56315 GAACCGCTCGACCAAGTTCTCGTTGACGATGCCGTCGGACGCGGCGAAGAAGGCGAGGAC 56374 Query 796236 GTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC---GAGACCCAGTGGACCGTGTCGGC 796292 |||| ||| |||| ||||||||| ||||| | |||||| | | |||| Sbjct 56375 GTGCGAGATGAAGTAGCGCTCGTCGGGCTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTT 56434 Query 796293 GCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTAC 796344 | | ||| | ||| ||||||||||| ||||| ||||||||||| |||||| Sbjct 56435 GGACAAGTCCATCTCTTCGGCGGTCCAGAAGGATGCCTCGGCCTTCTTGTAC 56486 Score = 87.8 bits (96), Expect = 3e-11 Identities = 169/242 (70%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 2069251 TGGTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCG 2069310 |||||||||||||||| ||| || | |||| | || ||||||| ||||||||||| Sbjct 6705 TGGTCGACGGTAAACTTGATCGCACCGACGGCGGCGCGCGTGCGCAAGTAGTACATGCCC 6646 Query 2069311 GTCTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCAT--TCG 2069368 ||||| | || || ||| |||| ||||||||||||| | || ||| ||| Sbjct 6645 GTCTTCAATCCTCGCTTCCAGCCGTAAAAATGCATCGACGTGA--GCTGCGCCATCGTCG 6588 Query 2069369 GG-ACGGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCC 2069427 || || || | | || |||||| || || |||||||| | | | |||||||| Sbjct 6587 GGCTCGACA-AATGGATGTTGAGTGATTGCGACTGGTCGATGAATGCACCCCGGTCGGCG 6529 Query 2069428 GCCATGTCGATGGTCACGCGGTTG-GACACCTCCCACACGGTCTTGAACAGGGCCTTGAG 2069486 | || |||||| | | ||| || | ||||| ||||||||| | | ||||||||| Sbjct 6528 GACAGATCGATGAT-GGTCTTTTGCGAGAGTTCCCAGACGGTCTTGTAGATGGCCTTGAG 6470 Query 2069487 AT 2069488 || Sbjct 6469 AT 6468 >seq97 Length=1700547 Score = 122 bits (134), Expect = 1e-21 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || |||| Sbjct 1079523 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACGG 1079464 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || |||| || | Sbjct 1079463 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGT-AGGACGCG--AGCTTGG 1079407 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| ||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 1079406 ACGCCTCGCCGGCGAGGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 1079347 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 1079346 CCTTGTTCGAGATACCGGTGTCGGGGTGAACCTGCTTCAACACCTTG 1079300 Score = 122 bits (134), Expect = 1e-21 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 |||| || || || |||| ||||||| ||| ||| || ||| | | ||||| || |||| Sbjct 1125509 CCTTTGTGCCTTCCGAGATGGCGTGCTTGGACAGCTCTCCGGGGAGGATCAATCGGACGG 1125450 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||||||||||||||| | ||| || ||||| |||| || |||| || | Sbjct 1125449 AGGTCTGGATCTCGCGCGACGAGATGGTCGACTTGCGGTTGT-AGGACGCG--AGCTTGG 1125393 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| ||| || | ||||||||||| |||||||| | ||| ||||| Sbjct 1125392 ACGCCTCGCCGGCGAGGCGCTCAAAGATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 1125333 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| |||||||| | ||||||| Sbjct 1125332 CCTTGTTCGAGATACCGGTGTCGGGGTGAACCTGCTTCAACACCTTG 1125286 Score = 109 bits (120), Expect = 9e-18 Identities = 162/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 1485485 CCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGG 1485544 ||||||| || || |||| ||||||| ||| || ||| ||| | | ||||| ||| || | Sbjct 1406955 CCTTGGTTCCTTCCGAGATGGCGTGCTTGGACAATTCTCCGGGGAGGATCAAGCGAACCG 1407014 Query 1485545 CGGTCTGGATCTCGCGGGTGCCGATCGTG---TTGCGCTTGTTAGTGCGCGCCAGGCGGC 1485601 ||| || |||||||| | ||| || ||||| |||| | |||| || || Sbjct 1407015 AGGTTTGAATCTCGCGCGACGAGATGGTCGACTTGCGGTTGT-ACAACGCG--AGCTTGC 1407071 Query 1485602 CGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCG 1485661 |||||| | ||| ||| |||| ||||||||||| |||||||| | ||| ||||| Sbjct 1407072 ACGCCTCGCCGGCGAGGCGCTCGAAAATGTCGTTGACGAACGAGTTGAGGATGAGCATCG 1407131 Query 1485662 ATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||||| || ||||||||| || || || | ||| ||| Sbjct 1407132 CCTTGTTCGAGATACCGGTGTCGGGGTGGACTTGTTTCAACACTTTG 1407178 >seq21 Length=1587489 Score = 116 bits (128), Expect = 6e-20 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 796140 AAAACACCTGGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGC 796199 ||| ||||| ||||| | | || ||||| || ||| | || ||| |||||| Sbjct 346852 AAAGCACCTCGCCTCTGCGAACTGCACCTCACTCGAGAACCTCTCGACCAAATTCTCATT 346911 Query 796200 CACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTC 796259 ||||| |||||| ||||||||||||||||| || || ||| |||| || ||||| Sbjct 346912 CACGACGCCGTCCGAAGCGGCGAAAAAGGCGAGTACATGGGCGATGAAGTAGCGTTCGTC 346971 Query 796260 GTCGCTGAGCGAGAC---CCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGT 796316 || | ||||| | ||||| | |||| ||||||||||| ||| ||||||| Sbjct 346972 GTTGTTGAGCTTGTGGTGCCAGTCGTGGAGGTCGTTGCCGAGGTCGATCTCTTCGGCGGA 347031 Query 796317 CCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATC 796356 ||||||||| |||| ||| | ||||||||| |||| ||| Sbjct 347032 CCAAAAGGACGCCTGGGCTTGTTTGTACATGGCCCAGATC 347071 >seq79 Length=1842920 Score = 86.0 bits (94), Expect = 1e-10 Identities = 197/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 2019147 GACGTCGTGCGTAGAATCATCAAGCATCACGCTTCGAAAAGAATCGACCTGCCGCCCGGC 2019206 |||||||| || | ||||||| | ||| ||||| || || || || || Sbjct 302894 GACGTCGTACGCAACCGCATCAAGGCTTTCGCCCAGAAAAAGGTCACACTCCCACCAGGT 302953 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 || |||||| | ||||||| ||||| ||||||| | || | | ||||| || || Sbjct 302954 CGGCACAAGCTCGTCATCCTTGATGAAGCCGACTCGATGACCCCAGGAGCCCAACAAGCT 303013 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 |||||| ||| ||||||| | | ||||||| || || || || | || |||||| | Sbjct 303014 CTCCGAAGGACGATGGAAATCTTCTCCAACACCACTCGCTTCGCCTTTGCGTGCAACCAG 303073 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 | | ||||||| | ||||||| || |||||||||||| | | || | || Sbjct 303074 AGCAACAAGATCATCGAGCCGATCCAGAGTCGATGCGCCATCTTGAGGTACTCGAGGCTG 303133 Query 2019387 ACCGACGCCCAGATCGCCG-CGCGTCTGCGCGAGATTATCGACGCCGAAAAGGT 2019439 | ||| ||| || | || | |||| ||| |||||| ||| |||||||| Sbjct 303134 AGCGATGCCGAG-TTGCTGAGGCGTTTGCTGGAGATTTGCGAAATTGAAAAGGT 303186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916233315928997