Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12- 23] 123 sequences; 24,532,870 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq79 98.7 2e-15 seq31 96.9 7e-15 seq21 95.1 2e-14 >seq79 Length=1842920 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||||| || || || ||||| || || || || | Sbjct 678891 TACCACCGCGGAGACGGAGCACCAAGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGG 678832 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||| ||||| | || || || ||||||| Sbjct 678831 CGAGCGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAGATCAATCGCTGCTGGTCTGGAG 678772 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | || | Sbjct 678771 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGA 678712 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || ||||||||||| |||| ||||| || || || ||||| Sbjct 678711 CCTCGAGCGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATTTGCAT 678663 >seq31 Length=897251 Score = 96.9 bits (106), Expect = 7e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| | || || || ||||| || || || || || || || || || || | Sbjct 114237 TACCACCTCGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCG 114178 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | || || || || || || || || ||||| || | ||| || ||||| | Sbjct 114177 CGAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGCG 114118 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| || || || || || ||||| || | || | Sbjct 114117 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 114058 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | || | || ||||||||||| || | ||||| || || || ||| | ||| Sbjct 114057 CCTCGAGGGTGATCGTCTTGCCCGTAAGAGTCTTGACGAAGATTTGCCTGATT 114005 >seq21 Length=1587489 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || || || || ||||| || || || || || || || || || || | Sbjct 1354138 ACCACCGCGCAGGCGGAGCACCAAGTGGAGGGTCGACTCCTTTTGGATGTTGTAGTCCGC 1354197 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | || || || || || || || || ||||| || | ||| || ||||| || Sbjct 1354198 GAGAGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGG 1354257 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| ||||| ||||| || || || || || ||||| || | || || Sbjct 1354258 AATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGGACTCGAC 1354317 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 || | || || |||||||| || | ||||| || || || |||| Sbjct 1354318 CTCGAGGGTGATGGTCTTGCCCGTAAGGGTCTTGACGAAGATTTGCA 1354364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825652701697