Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12- 23] 123 sequences; 24,532,870 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq36 215 7e-50 seq97 114 2e-19 seq21 95.1 2e-13 >seq36 Length=1210608 Score = 215 bits (238), Expect = 7e-50 Identities = 284/393 (72%), Gaps = 17/393 (4%) Strand=Plus/Plus Query 259790 GTCGTCGAGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCC 259849 |||| ||| || || ||| | |||||||||||||||||| | ||| | || | | Sbjct 4722 GTCGCCGAACGTCCGCAGCACATGCTCATGCGTGTCGCCGTCGGCATCCACGG---TCAC 4778 Query 259850 GACGTCGACAATGCGCTGGAGCACGTGCTCGCCA-CCTACGAGGCCATGTCGCAGCAGTT 259908 ||| |||| || ||| || || ||||| | |||||| ||| | Sbjct 4779 GACATCGA------------GCGCGT-CTTGCAGTCCTACAACCTCATGTCCGAGCGCTA 4825 Query 259909 GTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTC 259968 |||||| || |||| |||||||| |||||||| || || | ||||||| ||||| Sbjct 4826 CTTCACCCACGCCTCGCCGACGCTCTTCAATGCCGGTACCCCTCACCCGCAGCTCTCGTC 4885 Query 259969 GTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCA 260028 |||||| || | ||||||| ||| ||||| || |||||||| |||||||||||| Sbjct 4886 GTGCTTCTTGGTCACGATGAAGGACGACTCGATTGAAGGCATCTACGACACGCTCAAGAC 4945 Query 260029 GTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGC 260088 ||||||||||||||||||| | ||||| || |||||||| | ||||| | ||||| Sbjct 4946 GTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTAAGCATCCACAACATCCGCGC 5005 Query 260089 CGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCG 260148 | ||| ||||| | || ||||| |||||| | || || ||| | || |||||||| || Sbjct 5006 GACCGGCTCCTACATCGCCGGCACGAACGGCTACTCGAATGGCATCGTCCCCATGCTGCG 5065 Query 260149 CGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||| | ||| |||| ||||||||||||||||| Sbjct 5066 CGTCTACAACAACACCGCGCGCTACGTCGACCA 5098 Score = 140 bits (154), Expect = 5e-27 Identities = 306/465 (66%), Gaps = 12/465 (3%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| || ||||| || |||||| || ||||||||||||||| || Sbjct 5100 GGTGGCAACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTC 5159 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || | | |||||||| ||||| |||||||| || |||| |||| || Sbjct 5160 TTCGAGTTCCTGGACCTTCGCAAGAATCACGGCAA------GGAAGAAGTCCGCGCTCGT 5213 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCGC 261967 |||||||| | | || |||| ||| ||||| ||| || | | | ||| | || Sbjct 5214 GATCTCTTCTTTGCGCTCTGGATCCCCGATCTGTTCATGGAGCGTGTCGAGGCCGCCGGC 5273 Query 261968 GACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCGCGGCC 262027 || ||| | ||||| ||||| ||||||| |||||||| |||||| ||| |||| | Sbjct 5274 GAGTGGCCCCTCTTCTGCCCCGCCGAGGCCCCCGGCCTCCACGAAGTCTACGGCGAAGAG 5333 Query 262028 TTTGACGCCCTCTATGAGNNNNNNNNNNNNNNNNNNNNNNC---GCGGACCGTCGTGCCC 262084 || || ||| | ||| | | |||| || ||| Sbjct 5334 TTCCGCGTCCTGTTCGAGAAGTACGAAAAGGAGGGTCGCGCCAAGAAGACCATC---CCC 5390 Query 262085 GCACGACAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATG 262144 || | | || | |||| || || ||| |||||| |||||||||||| |||| |||| Sbjct 5391 GCGCAAAAGCTTTGGTACGCGATCCTCGAGGCCCAGGTCGAGACCGGCAACCCCTTCATG 5450 Query 262145 GTCTACAAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG 262204 ||||||||||||||| ||| | ||||| ||||||| ||||| | | | | Sbjct 5451 CTCTACAAGGACGCCGCGAACAAAAAGTCGAACCAAAAGAACCTCGGCACGATCAAATCG 5510 Query 262205 GCCAACCTGTGCACCGAGATCGTCCAGTTTTCGTCGCCCACCGAG 262249 | |||||||||||||||||| || ||| ||| | ||| |||| Sbjct 5511 TCGAACCTGTGCACCGAGATCATCGAGTACTCGGCTCCCGACGAG 5555 >seq97 Length=1700547 Score = 114 bits (126), Expect = 2e-19 Identities = 166/229 (72%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 1079300 CAAGGTGTTGAAGCAGGTTCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 1079353 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||| | |||||||| ||||||||||| | || ||| ||| | |||||| ||| | Sbjct 1079354 CATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCCTCGCCGGCGAGGC--GTC--CA 1079409 Query 725036 GGCGCGC-TCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091 || ||| ||| |||| ||||| ||| | | || ||||||||||||||| |||| | Sbjct 1079410 AGCTCGCGTCCTACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCCGTCC 1079469 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1079470 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1079518 Score = 114 bits (126), Expect = 2e-19 Identities = 166/229 (72%), Gaps = 14/229 (6%) Strand=Plus/Plus Query 724916 CAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGTC 724975 ||||||| | |||||||| |||||| |||| | ||| || |||||| | ||| Sbjct 1125286 CAAGGTGTTGAAGCAGGTTCACCCCGACACCGGT-----ATC-TCGAACAAGGCGATGCT 1125339 Query 724976 GATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCT 725035 ||| | |||||||| ||||||||||| | || ||| ||| | |||||| ||| | Sbjct 1125340 CATCCTCAACTCGTTCGTCAACGACATCTTTGAGCGCCTCGCCGGCGAGGC--GTC--CA 1125395 Query 725036 GGCGCGC-TCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCCGTGC 725091 || ||| ||| |||| ||||| ||| | | || ||||||||||||||| |||| | Sbjct 1125396 AGCTCGCGTCCTACAACCGCAAGTCGACCATCTCGTCGCGCGAGATCCAGACCTCCGTCC 1125455 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||||| | | ||| || ||| ||| ||||||| |||| || ||||| Sbjct 1125456 GATTGATCCTCCCCGGAGAGCTGTCCAAGCACGCCATCTCGGAAGGCAC 1125504 Score = 86.0 bits (94), Expect = 9e-11 Identities = 174/252 (69%), Gaps = 15/252 (6%) Strand=Plus/Minus Query 724894 CCTCGTACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGC 724953 |||||| |||| ||| || | ||| ||| | || || || |||||| |||| | Sbjct 1407197 CCTCGT-CTCG-CCTCTA-CAGCAAAGTGTTGAAACAAGTCCACCCCGACACCGGT---- 1407145 Query 724954 CATCCTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCA 725013 ||| || |||||| | ||| ||| | |||||||| ||||||||||| |||| ||| Sbjct 1407144 -ATC-TCGAACAAGGCGATGCTCATCCTCAACTCGTTCGTCAACGACATTTTCGAGCGCC 1407087 Query 725014 TCGGCACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAA---CACGATCGGCACGC 725070 ||| | |||||| | || ||| | |||| ||||| || ||| ||| Sbjct 1407086 TCGCCGGCGAGGCGTGCAAGCTCGCG---TTGTACAACCGCAAGTCGACCATCTCGTCGC 1407030 Query 725071 GCGAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCT 725130 ||||||| || ||| | || ||| ||||| | | ||| ||| || ||| ||||||| ||| Sbjct 1407029 GCGAGATTCAAACCTCGGTTCGCTTGATCCTCCCCGGAGAATTGTCCAAGCACGCCATCT 1406970 Query 725131 CCGAGGGCACCA 725142 | || || |||| Sbjct 1406969 CGGAAGGAACCA 1406958 >seq21 Length=1587489 Score = 95.1 bits (104), Expect = 2e-13 Identities = 168/241 (70%), Gaps = 13/241 (5%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| |||| |||||| || ||| || |||| ||||||||| ||||||| ||| |||||| Sbjct 347071 GATCTGGGCCATGTACAAACAAGCCC-AGGCGTCCTTTTGGTCCGCCGAAGAGATCGACC 347013 Query 1455835 TCGGCGCCGACACGGTCCACTGGGTGTC-------GCTGAGCGACGACGAGCGCCATTTC 1455887 ||||| |||| ||||| | || | ||| | | ||||||| ||| | ||| Sbjct 347012 TCGGCAACGAC---CTCCAC-GACTGGCACCACAAGCTCAACAACGACGAACGCTACTTC 346957 Query 1455888 ATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGC 1455947 ||| || || |||||| ||||||||||| || ||| ||||| ||||| ||| Sbjct 346956 ATCGCCCATGTACTCGCC-TTTTTCGCCGCTTCGGACGGCGTCGTGAATGAGAATTTGGT 346898 Query 1455948 CGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGAT 1456007 || | || || ||||| || || ||||||| | | ||||| || || ||||| Sbjct 346897 CGAGAGGTTCTCGAGTGAGGTGCAGTTCGCAGAGGCGAGGTGCTTTTATGGCTTTCAGAT 346838 Query 1456008 C 1456008 | Sbjct 346837 C 346837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177799336423926