Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12- 23] 123 sequences; 24,532,870 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq36 241 2e-58 seq55 118 1e-21 seq21 114 2e-20 >seq36 Length=1210608 Score = 241 bits (266), Expect = 2e-58 Identities = 568/848 (67%), Gaps = 11/848 (1%) Strand=Plus/Minus Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769 ||||| || |||| || || |||| | ||| || | | | |||||| || || || Sbjct 5584 GCGATCGAAGCCAAGTTGCAGACAGCGCACTCGTCGGGAGCCGAGTACTCGATGATCTCG 5525 Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829 ||||||| ||| || || || ||||| | ||||||||| || |||||| |||| Sbjct 5524 GTGCACAGGTTCGACGATTTGATCGTGCCGAGGTTCTTTTGGTTCGACTTTTTGTTCGCG 5465 Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 || |||||||| |||||| | || | || ||||| |||| || ||| || || | | Sbjct 5464 GCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGACCTGGGCCTCGAGGATCGCGTAC 5405 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | | | || || || | || ||||| || ||||| | |||||||| | | Sbjct 5404 CAAAGCTTTTGC-GCGGGGATGGTCTTCTTGGCGCGACCCTCCTTTTCGTACTTCTCGAA 5346 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| | |||||||| || | | || ||| || || |||| | |||||||| Sbjct 5345 CAGGACGCGGAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCCTCGGCGGGGCAGAA 5286 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | || | |||| || |||| |||||| || || |||||||||||||| Sbjct 5285 GAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAACAGATCGGGGATCCAGAGCGC 5226 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||||||||| ||| ||| ||||||| | || ||||| || | |||| || Sbjct 5225 AAAGAAGAGATCACGAGCGCGGACTTCTTCCTTGCCGTGATTCTTGCGAAGGTCCAGGAA 5166 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 119185 || | || || ||||||||||| || ||||| | ||||| | || ||| Sbjct 5165 CTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTT 5106 Query 119186 ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 ||| | |||| || || | ||| ||| ||| | || || ||||| || | ||| || Sbjct 5105 GCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACGCGCAGCATGGGGACGATGCC 5046 Query 119246 ATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATG 119303 || || | ||| || || || ||| || ||| | | || | || | ||||||| Sbjct 5045 ATTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCC--GGTCGCGCGGATGTTGTGGATG 4988 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 | ||| ||||| || || ||| ||||| |||||||| | |||| || ||||| Sbjct 4987 CTTAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 4928 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || || |||||||| |||| | | || | |||||| ||| | || || Sbjct 4927 ATGCCTTCAATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGA 4868 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTG 119483 || ||||| || |||||||| || || | |||||| |||| | | |||||| | Sbjct 4867 GGGGTACCGGCATTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGG 4808 Query 119484 TCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542 | ||||| || ||||||| || | ||||| | ||||| || |||| | ||| ||||| Sbjct 4807 TTGTAGGACTGCAAGACGCGCTCG-ATGTCGTGACCGTGGATGCCGACGGCGACACGCAT 4749 Query 119543 AAACATGT 119550 | ||||| Sbjct 4748 GAGCATGT 4741 >seq55 Length=958678 Score = 118 bits (130), Expect = 1e-21 Identities = 274/409 (67%), Gaps = 3/409 (1%) Strand=Plus/Minus Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861 || ||||| || |||| ||| ||| || || || || |||| ||| || | Sbjct 914243 TACCAAGCCTCGACCTCCGAGCTGTACGGCAAGGTCGTCGAGACCCCTCAATCCGAAACG 914184 Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 11921 ||||||||||| || || || || || ||| | ||| | || ||| |||| Sbjct 914183 ACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTC 914124 Query 11922 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAG 11981 ||||| ||||| || || || | | | |||||| |||||| ||||||||||||||| Sbjct 914123 AAGAACTACCGCGAGTCATACGACATGTACGCGTGCAATGGTATCCTCTTCAACCACGAG 914064 Query 11982 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGATGGTATCAAACAAAT 12040 || || |||||||| | ||||| || | |||||| | ||| | | || | || Sbjct 914063 TCCCCACGTCGTGGTCGCACCTTCGTCACGAGGAAGATTTCGCGA-GCTGTCGCCGAGAT 914005 Query 12041 CGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 12100 | ||| | ||| | | | | | || ||| | | ||| || | || ||||| Sbjct 914004 CTCACTCGGTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCGTGATTGGGG 913945 Query 12101 ACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGA 12160 |||||| |||||||| || | ||||||| | | ||||| | || | | | ||||| Sbjct 913944 ACATGCGCGCGACTATGTCGAGGGCATGTGGATGATGCTTCAGC-AGGACACCCCGACGA 913886 Query 12161 ATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209 | ||| |||||||||| ||||| ||| |||||| ||||||||| ||| Sbjct 913885 CTTTGTTCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCGTCGAG 913837 >seq21 Length=1587489 Score = 114 bits (126), Expect = 2e-20 Identities = 337/506 (67%), Gaps = 19/506 (4%) Strand=Plus/Minus Query 179681 TACCCTTGGAAGCCTTGATGATTGGTGTCACCA--TTGAGACCACAAACCCC--AACTTG 179736 ||||||||| ||||||| ||| || || | | | ||| | | || |||| | |||| Sbjct 553211 TACCCTTGGTCGCCTTGACGATGGGAGTGATGAACTCGAG-CAAGAAGCCCCTCAGCTTG 553153 Query 179737 AGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCA 179796 || | ||| || | |||| | || | ||||| ||| | |||||| ||||| || ||| Sbjct 553152 AGCAACGAAGGGAACCAGTAATCGAGGAAATTGATGATCAAACCCTTGATGTGGGATCCA 553093 Query 179797 TCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGA 179856 |||| |||| ||| | ||| ||||| ||| || || || ||| | || || Sbjct 553092 TCGTGATCCTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCGGTG 553033 Query 179857 TAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGAT 179916 ||| | || || || || ||||||||||||| ||||| | ||||| ||| || | | Sbjct 553032 TAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT--T 552977 Query 179917 GT-GAGTTGCGCC---ACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAA 179972 || ||| ||| | | || || || || || |||| || || | || || Sbjct 552976 GTCGAGCAAGGCCTTGCCCGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAGGGAAA 552917 Query 179973 CACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGA 180032 ||||| |||| || ||||| || || | ||||| | || ||||| | || || || Sbjct 552916 GACACCATAGTTGTCTCGACCGACGACGGCCAGACCGGACACGGCGAGCGCTTTGGCAGA 552857 Query 180033 ATCACCCTCCGTCACGATGAGCGTACACTT--TCCAGATTGTGCCGTCCCTGCCTTGTTC 180090 ||| || || |||| ||||||||| ||||| || | | | ||| || || |||||| Sbjct 552856 ATCTCCTTCGGTCAAGATGAGCGTGCACTTGGACCCGTTCCT--CGTTCCAGCGTTGTTC 552799 Query 180091 GCGTCGTCCAACTTGGGAATACCAGTAATTTTGGA-CTTACGAGCGCCATCTGTCTTCTT 180149 || || || | |||| ||||| | ||| || | | | | ||||| ||||| || Sbjct 552798 GCATCCTCGAGCTTGACGATACCCGAAATACGCGATCGTTTGTG-TCCATCCGTCTTTTT 552740 Query 180150 GAGTTCCTTCATCTCCTTGAACTTGG 180175 ||| || || ||||||||||| Sbjct 552739 GAGCATCTGGTCCTGCTTGAACTTGG 552714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/187 (72%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 129925 GAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTC---TCCGTGCC 129981 |||| |||||||||| || || || ||| |||||| || |||| | ||| |||| Sbjct 346185 GAACTCCTTCTCAATATCAACGGCCTCCTTCACGATC-CG---ATGGACCAATCCTTGCC 346240 Query 129982 A-GGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGT 130040 ||||| ||| |||| |||| | ||||| || || |||||||| |||| Sbjct 346241 CCGGTCTCTTGTTCAAATGACTGAACAAAAGGACGGCGAATTCAGTATGGAGACCTTCGT 346300 Query 130041 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 130100 | ||||||||||| || || ||||| || || || |||||||| || || ||||| | || Sbjct 346301 CGCGGGAGATGAGCTCGTTGGAGAAACAGAGGCCGGGCATGAGGCCTCGTTTCTTGAGCC 346360 Query 130101 AGAAAAT 130107 |||| || Sbjct 346361 AGAAGAT 346367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434249155880