Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12-
23] 123 sequences; 24,532,870 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq36 241 2e-58
seq55 118 1e-21
seq21 114 2e-20
>seq36
Length=1210608
Score = 241 bits (266), Expect = 2e-58
Identities = 568/848 (67%), Gaps = 11/848 (1%)
Strand=Plus/Minus
Query 118710 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 118769
||||| || |||| || || |||| | ||| || | | | |||||| || || ||
Sbjct 5584 GCGATCGAAGCCAAGTTGCAGACAGCGCACTCGTCGGGAGCCGAGTACTCGATGATCTCG 5525
Query 118770 GTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 118829
||||||| ||| || || || ||||| | ||||||||| || |||||| ||||
Sbjct 5524 GTGCACAGGTTCGACGATTTGATCGTGCCGAGGTTCTTTTGGTTCGACTTTTTGTTCGCG 5465
Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889
|| |||||||| |||||| | || | || ||||| |||| || ||| || || | |
Sbjct 5464 GCGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGACCTGGGCCTCGAGGATCGCGTAC 5405
Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948
|| | | | || || || | || ||||| || ||||| | |||||||| | |
Sbjct 5404 CAAAGCTTTTGC-GCGGGGATGGTCTTCTTGGCGCGACCCTCCTTTTCGTACTTCTCGAA 5346
Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008
||| | |||||||| || | | || ||| || || |||| | ||||||||
Sbjct 5345 CAGGACGCGGAACTCTTCGCCGTAGACTTCGTGGAGGCCGGGGGCCTCGGCGGGGCAGAA 5286
Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
||| | ||| | || | |||| || |||| |||||| || || ||||||||||||||
Sbjct 5285 GAGGGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAACAGATCGGGGATCCAGAGCGC 5226
Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128
|||||||||| ||| ||| ||||||| | || ||||| || | |||| ||
Sbjct 5225 AAAGAAGAGATCACGAGCGCGGACTTCTTCCTTGCCGTGATTCTTGCGAAGGTCCAGGAA 5166
Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 119185
|| | || || ||||||||||| || ||||| | ||||| | || |||
Sbjct 5165 CTCGAAGACGTCGGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGACGCTTGTT 5106
Query 119186 ACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245
||| | |||| || || | ||| ||| ||| | || || ||||| || | ||| ||
Sbjct 5105 GCCACCTTGGTCGACGTAGCGCGCGGTGTTGTTGTAGACGCGCAGCATGGGGACGATGCC 5046
Query 119246 ATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGGATG 119303
|| || | ||| || || || ||| || ||| | | || | || | |||||||
Sbjct 5045 ATTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCC--GGTCGCGCGGATGTTGTGGATG 4988
Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363
| ||| ||||| || || ||| ||||| |||||||| | |||| || |||||
Sbjct 4987 CTTAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 4928
Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423
|| || || |||||||| |||| | | || | |||||| ||| | || ||
Sbjct 4927 ATGCCTTCAATCGAGTCGTCCTTCATCGTGACCAAGAAGCACGACGAGAGCTGCGGGTGA 4868
Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTG 119483
|| ||||| || |||||||| || || | |||||| |||| | | |||||| |
Sbjct 4867 GGGGTACCGGCATTGAAGAGCGTCGGCGAGGCGTGGGTGAAGTAGCGCTCGGACATGAGG 4808
Query 119484 TCGTAGGTCTCCAAGACG-GCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCAT 119542
| ||||| || ||||||| || | ||||| | ||||| || |||| | ||| |||||
Sbjct 4807 TTGTAGGACTGCAAGACGCGCTCG-ATGTCGTGACCGTGGATGCCGACGGCGACACGCAT 4749
Query 119543 AAACATGT 119550
| |||||
Sbjct 4748 GAGCATGT 4741
>seq55
Length=958678
Score = 118 bits (130), Expect = 1e-21
Identities = 274/409 (67%), Gaps = 3/409 (1%)
Strand=Plus/Minus
Query 11802 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCACAAAATGAGGAG 11861
|| ||||| || |||| ||| ||| || || || || |||| ||| || |
Sbjct 914243 TACCAAGCCTCGACCTCCGAGCTGTACGGCAAGGTCGTCGAGACCCCTCAATCCGAAACG 914184
Query 11862 ACGCCCTTCTATCCACGATCCGTCTATGGCGTCTCAAAGGTTGCGGCACATTGGCTCGTG 11921
||||||||||| || || || || || ||| | ||| | || ||| ||||
Sbjct 914183 ACGCCCTTCTACCCTCGTTCGCCTTACGGAGTCGCCAAGTTGTACGCCTTCTGGATCGTC 914124
Query 11922 AAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCTGGTATTCTCTTCAACCACGAG 11981
||||| ||||| || || || | | | |||||| |||||| |||||||||||||||
Sbjct 914123 AAGAACTACCGCGAGTCATACGACATGTACGCGTGCAATGGTATCCTCTTCAACCACGAG 914064
Query 11982 TCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCAC-CGATGGTATCAAACAAAT 12040
|| || |||||||| | ||||| || | |||||| | ||| | | || | ||
Sbjct 914063 TCCCCACGTCGTGGTCGCACCTTCGTCACGAGGAAGATTTCGCGA-GCTGTCGCCGAGAT 914005
Query 12041 CGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACTGGGG 12100
| ||| | ||| | | | | | || ||| | | ||| || | || |||||
Sbjct 914004 CTCACTCGGTCAACAGGACTGCCTCTACCTCGGCAACATGGAGGCCAAGCGTGATTGGGG 913945
Query 12101 ACATGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGGACGA 12160
|||||| |||||||| || | ||||||| | | ||||| | || | | | |||||
Sbjct 913944 ACATGCGCGCGACTATGTCGAGGGCATGTGGATGATGCTTCAGC-AGGACACCCCGACGA 913886
Query 12161 ATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 12209
| ||| |||||||||| ||||| ||| |||||| ||||||||| |||
Sbjct 913885 CTTTGTTCTCGCGACGGGTGAGACCCACCCCGTCAAGGAGTTCGTCGAG 913837
>seq21
Length=1587489
Score = 114 bits (126), Expect = 2e-20
Identities = 337/506 (67%), Gaps = 19/506 (4%)
Strand=Plus/Minus
Query 179681 TACCCTTGGAAGCCTTGATGATTGGTGTCACCA--TTGAGACCACAAACCCC--AACTTG 179736
||||||||| ||||||| ||| || || | | | ||| | | || |||| | ||||
Sbjct 553211 TACCCTTGGTCGCCTTGACGATGGGAGTGATGAACTCGAG-CAAGAAGCCCCTCAGCTTG 553153
Query 179737 AGGAGCGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCA 179796
|| | ||| || | |||| | || | ||||| ||| | |||||| ||||| || |||
Sbjct 553152 AGCAACGAAGGGAACCAGTAATCGAGGAAATTGATGATCAAACCCTTGATGTGGGATCCA 553093
Query 179797 TCGTTATCCGCATCCGTCATAATCATAAGCCGACCATAGCGAAGCTCGGAAACATCTTGA 179856
|||| |||| ||| | ||| ||||| ||| || || || ||| | || ||
Sbjct 553092 TCGTGATCCTGATCGGCCATGATCATGAGCTTGCCGTAACGGAGCGAGTCGACGTCGGTG 553033
Query 179857 TAATCCTTACCTTGTTGAAGACCCAAGATCTTCTTGAGATCATTGAACTCTTGGTTTGAT 179916
||| | || || || || ||||||||||||| ||||| | ||||| ||| || | |
Sbjct 553032 TAAACTTTGCCCTGCTGCAGACCCAAGATCTGCTTGATCGC-TTGAA-TCTCGGCAT--T 552977
Query 179917 GT-GAGTTGCGCC---ACTGAAGCATCTCGGACATTTTTACACTTCCCACGGAGAGGGAA 179972
|| ||| ||| | | || || || || || |||| || || | || ||
Sbjct 552976 GTCGAGCAAGGCCTTGCCCGCCGCTTCACGCACGTTGAGCAACTTTCCTCGCAAGGGAAA 552917
Query 179973 CACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTCGCGGA 180032
||||| |||| || ||||| || || | ||||| | || ||||| | || || ||
Sbjct 552916 GACACCATAGTTGTCTCGACCGACGACGGCCAGACCGGACACGGCGAGCGCTTTGGCAGA 552857
Query 180033 ATCACCCTCCGTCACGATGAGCGTACACTT--TCCAGATTGTGCCGTCCCTGCCTTGTTC 180090
||| || || |||| ||||||||| ||||| || | | | ||| || || ||||||
Sbjct 552856 ATCTCCTTCGGTCAAGATGAGCGTGCACTTGGACCCGTTCCT--CGTTCCAGCGTTGTTC 552799
Query 180091 GCGTCGTCCAACTTGGGAATACCAGTAATTTTGGA-CTTACGAGCGCCATCTGTCTTCTT 180149
|| || || | |||| ||||| | ||| || | | | | ||||| ||||| ||
Sbjct 552798 GCATCCTCGAGCTTGACGATACCCGAAATACGCGATCGTTTGTG-TCCATCCGTCTTTTT 552740
Query 180150 GAGTTCCTTCATCTCCTTGAACTTGG 180175
||| || || |||||||||||
Sbjct 552739 GAGCATCTGGTCCTGCTTGAACTTGG 552714
Score = 87.8 bits (96), Expect = 2e-12
Identities = 134/187 (72%), Gaps = 8/187 (4%)
Strand=Plus/Plus
Query 129925 GAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGAATGGTC---TCCGTGCC 129981
|||| |||||||||| || || || ||| |||||| || |||| | ||| ||||
Sbjct 346185 GAACTCCTTCTCAATATCAACGGCCTCCTTCACGATC-CG---ATGGACCAATCCTTGCC 346240
Query 129982 A-GGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTGGTGGAGACCCTCGT 130040
||||| ||| |||| |||| | ||||| || || |||||||| ||||
Sbjct 346241 CCGGTCTCTTGTTCAAATGACTGAACAAAAGGACGGCGAATTCAGTATGGAGACCTTCGT 346300
Query 130041 CACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACC 130100
| ||||||||||| || || ||||| || || || |||||||| || || ||||| | ||
Sbjct 346301 CGCGGGAGATGAGCTCGTTGGAGAAACAGAGGCCGGGCATGAGGCCTCGTTTCTTGAGCC 346360
Query 130101 AGAAAAT 130107
|||| ||
Sbjct 346361 AGAAGAT 346367
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434249155880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |