Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900008855.1_202016-12- 23] 123 sequences; 24,532,870 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq36 354 9e-93 seq21 143 3e-29 >seq36 Length=1210608 Score = 354 bits (392), Expect = 9e-93 Identities = 539/765 (70%), Gaps = 2/765 (0%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| |||||| | || ||||||||| ||||| | ||| ||| || | ||| Sbjct 4747 TCATGCGTGTCGCCGTCGGCATCCACGGTCACGACATCGAGCGCGTCTTGCAGTCCTACA 4806 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 || | ||| | | ||||| || |||||| |||| || || ||||| || ||||| Sbjct 4807 ACCTCATGTCCGAGCGCTACTTCACCCACGCCTCGCCGACGCTCTTCAATGCCGGTACCC 4866 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 |||||| ||| | ||| |||||| |||| |||||||||| |||||||| || |||| Sbjct 4867 CTCACCCGCAGCTCTCGTCGTGCTTCTTGGTCACGATGAAGGACGACTCGATTGAAGGCA 4926 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| ||||||||| ||| || | |||||||||| | |||||||||||| | Sbjct 4927 TCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACCGCCGGTGGTATCGGTTTAA 4986 Query 53433 ACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATG 53492 | | ||| |||| |||| |||| | ||| || ||||||||| | | ||| Sbjct 4987 GCATCCACAACATCCGCGCGACCGGCTCCTACATCGCCGGCACGAACGGCTACTCGAATG 5046 Query 53493 GAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTG 53552 | ||||| || ||||| ||||||| ||||||||| || || |||||| |||| ||||| Sbjct 5047 GCATCGTCCCCATGCTGCGCGTCTACAACAACACCGCGCGCTACGTCGACCAAGGTGGCA 5106 Query 53553 GGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGT 53612 ||||| || | ||||| ||||||||||||||||||||||||||| | | |||| Sbjct 5107 ACAAGCGTCCCGGAGCCTTCGCGATCTACCTCGAGCCGTGGCACGCCGACGTCTTCGAGT 5166 Query 53613 TTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAG 53672 | || || || || |||||| || | ||||| | ||| ||||| || || | Sbjct 5167 TCCTGGACCTTCGCAAGAATCACGGCAAGGAAGAAGTCCGCGCTCGTGATCTCTTCTTTG 5226 Query 53673 CTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGA 53732 | || ||||| || || || |||||| | || ||| | || |||||| ||| Sbjct 5227 CGCTCTGGATCCCCGATCTGTTCATGGAGCGTGTCGAGGCCGCCGGCGAGTGGCCCCTCT 5286 Query 53733 TGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGT 53792 | ||||| |||| |||||||||||| | |||||||| || ||||| || ||| Sbjct 5287 TCTGCCCCGCCGAGGCCCCCGGCCTCCACGAAGTCTACGGCGAAGAGTTCCGCGTCCTGT 5346 Query 53793 ATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGG 53851 ||| || ||||| | |||| ||| |||||||| || |||| || | ||| Sbjct 5347 -TCGAGAAGTACGAAAAGGAGGGTCGCGCCAAGAAGACCATCCCCGCGCAAAAGCTTTGG 5405 Query 53852 GATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCG 53911 | || |||||| || |||||| ||||| || | || | |||| ||||||||| | Sbjct 5406 TACGCGATCCTCGAGGCCCAGGTCGAGACCGGCAACCCCTTCATGCTCTACAAGGACGCC 5465 Query 53912 GTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCG 53956 | ||| | ||| ||||| |||||| ||||| ||||||||| Sbjct 5466 GCGAACAAAAAGTCGAACCAAAAGAACCTCGGCACGATCAAATCG 5510 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 55726 TCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAG 55785 |||||||| || ||| ||| || ||||| | | || |||| | || || || Sbjct 6469 TCTCAAGGCCATCTACAAGACCGTCTGGGAACTCTCGCAAAAGACCATCATCGATCTGTC 6528 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 || || || ||||| | |||||||||||| || || || |||||| || || || Sbjct 6529 CGCCGACCGGGGTGCATTCATCGACCAGTCGCAATCACTCAACATCCATTTGTCGAGCCC 6588 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | |||| || | | |||||||| |||||||| |||||| ||| | |||||||| Sbjct 6589 GACGATGGCGCAGCTCACGTCGATGCATTTTTACGGCTGGAAGCGAGGATTGAAGACGGG 6648 Query 55906 TATGTACTATCTGCGGACCCGCGCC 55930 |||||||| |||| || |||||| Sbjct 6649 CATGTACTACTTGCGCACGCGCGCC 6673 >seq21 Length=1587489 Score = 143 bits (158), Expect = 3e-29 Identities = 210/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| || | |||||| || ||||||||| ||| ||||| ||||| || Sbjct 553849 CGTGAAGATGTAACGAGCCGAGGCCGCGTCTTTGCCACCTTGCAGACGCGTACCAAATTG 553790 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || ||| ||||||| |||||||||||||| || ||||| | || ||||| | Sbjct 553789 ACCGTTGGGGTCGAGGATGTTGAGGTTGTTGGACCCAACGAACTGTTGTGCCAAGCCGAT 553730 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 || || || |||| |||| || ||||| || ||||||| ||||| |||| || || Sbjct 553729 GATGGTACCTTGCAAACTCAAATCGCCGTGATGGTACGCCGAGTGCTCGGCGACATAACC 553670 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| || | ||||| || ||| ||||| || ||||| || || | | || Sbjct 553669 GCCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGAC 553610 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 |||||| || ||||| ||||| || | ||| ||| ||||||||| | |||| Sbjct 553609 CTTGCGTTGACCCGGTTTAAAACCATCAATGACGGAAGGGATCGAACGCACGTTGTC 553553 Score = 123 bits (136), Expect = 3e-23 Identities = 205/296 (69%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || || || |||||||| ||||||||||| ||||| Sbjct 553848 GTGAAGATGTAACGAGCCGAGGCCGCGTCTTTGCCACCTTGCAGACGCGTACCAAATTGA 553789 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || || | || ||| |||||||||| || || || | ||| |||||| || Sbjct 553788 CCGTTGGGGTCGAGGATGTTGAGGTTGTTGGACCCAACGAACTGTTGTGCCAAGCCGATG 553729 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || |||||||| | ||| || || || || ||||||| ||||| || || || || Sbjct 553728 ATGGTACCTTGCAAACTCAAATCGCCGTGATGGTACGCCGAGTGCTCGGCGACATAACCG 553669 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 ||| || | ||||| || || ||||| || ||||| ||| | | | ||| Sbjct 553668 CCCAATTGTCCGACCTTGATCTCCTGCGTCAACTTGCGCTTGAAGCAACCGAACAAGACC 553609 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTC 117600 ||||| |||| || || | |||||| ||| ||||||||||||| | |||| Sbjct 553608 TTGCGTTGACCCGGTTTAAAACCATCAATGACGGAAGGGATCGAACGCACGTTGTC 553553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215158655400