Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microbotryum_20violaceum_20[genbank_20GCA_5F900009495.1_202016-12- 23] 223 sequences; 35,405,415 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq107 271 7e-68 seq115 122 8e-23 seq82 109 5e-19 seq120 98.7 9e-16 seq46 95.1 1e-14 >seq107 Length=347312 Score = 271 bits (300), Expect = 7e-68 Identities = 899/1393 (65%), Gaps = 42/1393 (3%) Strand=Plus/Minus Query 22502 GATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGC 22561 || ||| |||| ||||| | || ||| || || |||||| ||||| ||||||||| Sbjct 18657 GAAGTGTACGGCTCGAAGCACTCGTTGAAGCCGAGGATCTGACTCGTCGACGCGGTCGGC 18598 Query 22562 ATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATC 22621 || ||||| ||| |||||||| | | || ||||||| ||| || ||||||| Sbjct 18597 ATTGGCGCGCACACAAGCGAGTTGCGGAGACCATGCTTTGCAATCTTCTCCTTGAGCTCG 18538 Query 22622 GACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCG 22681 | ||| |||||||||||| ||| |||||| |||||| ||||| |||||| |||| Sbjct 18537 GTCCAATCCCACAGATCGCTCGGGGTCACAC---CCCACAAGTCGTACTGCAACTCGCCC 18481 Query 22682 CGACTCGCCGGGCTGCCTTCGTACGTTTCGTA---------------CGGA----CCATA 22722 || ||||| || ||| || ||| ||| ||||| Sbjct 18480 TGAGAAGCCGGAGATCCGGGGTAAGTCGAGTAGTAGCCTGGGTCGCCCGGGTTAGCCATA 18421 Query 22723 TA----TCGCG-GCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAG 22777 ||||| || | ||||| || ||| | |||| ||| || || ||||||||| Sbjct 18420 GCAAAGTCGCGTGCCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATGGTCTCGAAG 18361 Query 22778 ATTTTCTTGTTCAATTCG-GCGGC---GGCGACGCTTTCGTACGGCATACGCATCATCAC 22833 || | |||||| | | | ||| | ||||| ||| ||||||| || || Sbjct 18360 ATCTGCTTGTTGAGCTTGCGCGCCTCGGGCGAA----TCGAACGGCATCGCCAAGGCCAT 18305 Query 22834 GAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGATTCGACAC 22893 ||||||||| || | ||| || || || || ||||| || |||| | ||| || Sbjct 18304 GAACGCGTCGGCGAGACCTTGCACTCCGATGCCGATGGGGCGGTGGCGGAAATTGGAGTT 18245 Query 22894 TTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTTCTGGTCAC 22953 | |||||| | |||||| |||| ||||| | | ||||||||| | || Sbjct 18244 CTGCGCCTCGATGACAGGATAGTAATTGACGTCGATGATGCGGTTCAAGTTGAAAGCGAC 18185 Query 22954 AATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACAACAAACTT 23013 | || | | ||||||||| ||||| || | | || || Sbjct 18184 GACCTTGACGACCTCGTGCAACTTTTTAAAGTCGTACACGCCG--TTCTTGATGAAGCTC 18127 Query 23014 GTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTAC 23073 | ||| |||||||||| | ||||| ||||| |||||| | || |||||| | Sbjct 18126 GGCAACG-CGATCGAGGCCAAGTTGCAGACGGCGCACTCGTCCGGTGCCGAGTACTCGAT 18068 Query 23074 AATTTCGGTACATAGATTGCTAC-ACTTTATCGTGCCCAAATTGCTCTGGTT-GCTTTTT 23131 || ||||| || | || | || |||| ||||| || | || | ||||| | ||| | Sbjct 18067 GATCTCGGTGCACAAGTT-CGACGACTTGATCGTCCCAAGGTTCTTTTGGTTTGATTTCT 18009 Query 23132 CGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATG 23191 | | || | ||||||||||||||| | || |||| || |||||||| | ||||| Sbjct 18008 TGTTCGCG-GCGTCCTTGTAGAGCATGAAGGGGTTGCCAGTTTCGACCTGGGCCTCGAGA 17950 Query 23192 ATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTAC 23251 || || ||| | | || ||| | | | | | | ||| || | ||||| Sbjct 17949 ATTGCGTACCAAAGCTTTTGCGCGGGGATCGTTTTCTTGGCGCGGCCCTCCTTTTCGTAT 17890 Query 23252 TTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATC 23311 || | | |||| ||| || || | || || ||| |||||||| | || Sbjct 17889 TTCTCGAACAAGGCGCGGAACTCTTCGCCATAGACTTCGTGGAGGCCGGGGGCTTCGGCG 17830 Query 23312 GGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATC 23371 || || | |||| |||| | | || || || ||| || ||||| || ||| Sbjct 17829 GGGCAGAAGAGAGGCCACTCGCCGGCGGCCTCGACACGCTCCATGAAGAGATCGGGAATC 17770 Query 23372 CATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAA 23431 || || || |||| || || || ||||| || ||||| |||||| ||||| | Sbjct 17769 CAGAGCGCAAAGAAGAGATCACGAGCGCGGACTTCCTCCTTGCCGTGATTCTTGCGAAGG 17710 Query 23432 TCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGT 23491 |||| || || || ||||| || ||||||||||||||||| | || || || || || Sbjct 17709 TCCAGGAACTCAAAGACGTCAGCGTGCCACGGCTCGAGGTAGATCGCGAAGGCTCCGGGA 17650 Query 23492 CTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGC 23551 | ||| ||||| || || |||||||| || |||||||||||||| || | ||||| || Sbjct 17649 CGCTTGTTGCCACCTTGGTCGACGTAGCGCGCCGTGTTGTTGTAGACACGGAGCATGGGG 17590 Query 23552 ACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTG 23611 |||| ||||| || |||| ||| || | || || |||| || | |||| Sbjct 17589 ACGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTAGGAGCCGGTTGCGCGGATGTTG 17530 Query 23612 TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTG 23671 || | | ||||| || || ||| | | || || || | |||||| || || ||| Sbjct 17529 TGGATGCTCAAACCGATACCACCGGCGGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTG 17470 Query 23672 TCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGC 23731 ||||| ||||| || || || || || ||| ||||| |||||| || || | ||| Sbjct 17469 TCGTAAATGCCTTCAATCGAATCATCCTTCATCGTGACCAGGAAACAGGACGAAAGCTGC 17410 Query 23732 GCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGAC 23791 | | ||||| |||| ||| || ||||| |||||| |||||||| | | ||| Sbjct 17409 GGGTGAGGCGTTCCGGCGTTGAAGAGCGTCGGCGAGGCGTGGGTAAAGTAGCGCTCGGAC 17350 Query 23792 ATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACG 23851 || || ||||| | | | | || |||||||| | ||||| || |||| |||||| Sbjct 17349 ATGAGGTTGTAAGACTGCAAGACGCGCTCAATGTCGTGACCGTGGATGCCGACGGCGACA 17290 Query 23852 CGCATCATCATGT 23864 ||||| | ||||| Sbjct 17289 CGCATGAGCATGT 17277 >seq115 Length=605796 Score = 122 bits (134), Expect = 8e-23 Identities = 172/239 (72%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 31194 TGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCG 31253 ||||||| || || ||||| || || ||||| || |||||| |||| || || |||||| Sbjct 306077 TGCAAATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCGTCCG 306136 Query 31254 ACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| |||| | ||||| || ||| | |||||||||||| | ||||| |||||| Sbjct 306137 ACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACCAG 306195 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| ||||| ||| | || || || || ||| || ||| Sbjct 306196 CAACGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACAAC 306255 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAGCG 31427 || |||||||| |||||||| || |||| || | ||| | || ||| ||||||| Sbjct 306256 ATCCAAAAAGAGTCGACTCTCCACTTGGTGCTCCGCCTGCGTGGTGGTGCCAAGAAGCG 306314 >seq82 Length=702097 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 || |||||| || || |||||||| || ||||| ||||||||| |||| || || |||| Sbjct 523001 CAGGCAAATCTTTGTCAAGACTCTTACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTC 522942 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 ||||| |||| | ||||| || ||| | |||||||||||| | ||||| |||| Sbjct 522941 CGACACGATCGACAACGTCAAGACCAAGA-TCCAAGACAAGGAAGGCATCCCGCCAGACC 522883 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 |||| ||||| || || || ||||| ||| | || || || || ||| || | Sbjct 522882 AGCAACGTCTCATCTTTGCCGGCAAGCAGCTCGAGGATGGCCGCACCTTGGCCGACTACA 522823 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| ||||| || || || || || |||| || Sbjct 522822 ACATCCAAAAGGAGTCCACCCTCCACTTGGTCCT 522789 >seq120 Length=764448 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 228744 ATGCAAATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 228685 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||| || ||| | || || ||||| Sbjct 228684 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAA 228625 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||||||||| ||| | || || || | |||||| ||| Sbjct 228624 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 228565 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || |||| || Sbjct 228564 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCT 228533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 228516 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 228457 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||| || ||| | || || ||||| Sbjct 228456 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAA 228397 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||||||||| ||| | || || || | |||||| ||| Sbjct 228396 CAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCCGATTACAAC 228337 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || ||||| || || |||| || Sbjct 228336 ATTCAGAAGGAGTCGACGCTGCACTTGGTGCT 228305 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| ||||| |||||||| |||| || || | || Sbjct 228288 ATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 228229 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||| || ||| | || || ||||| Sbjct 228228 GACACGATCGACAACGTCAAGGCCAAGATTCAGGACAAAGAGGGCATTCCCCCAGACCAA 228169 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||||||||| ||| | || || || | |||||| || Sbjct 228168 CAACGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACGCTCGCCGATTACAAT 228109 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| || ||||| || || |||| || Sbjct 228108 ATCCAAAAGGAGTCGACGCTGCACTTGGTGCT 228077 >seq46 Length=591722 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || ||||| |||||||| |||| || ||| | || Sbjct 538692 ATGCAAATTTTCGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAATCCTCG 538633 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || || || |||||||| ||| | || || ||||| Sbjct 538632 GACACGATTGACAACGTCAAGACCAAG-ATCCAAGACAAGGAGGGCATTCCCCCAGACCA 538574 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||| || ||||||||||| ||| | || || Sbjct 538573 ACAACGTCTCATCTTCGCTGGCAAGCAGCTCGAGGA 538538 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || ||||| |||||||| |||| || || |||| Sbjct 538920 ATGCAAATCTTCGTCAAGACGCTTACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCG 538861 Query 31253 GACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||||||||| ||| | || || ||||| Sbjct 538860 GACACGATTGACAACGTCAAGACCAAGATTCA-GGACAAGGAGGGCATTCCCCCAGACCA 538802 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || || | || ||||||||||| ||| | || || || | ||||| || Sbjct 538801 ACAACGATTGATCTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACGCTCGCGGATTACAA 538742 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || ||||| ||||| |||| Sbjct 538741 CATCCAGAAGGAGTCGACGCTTCACTTGGT 538712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765157426160